g15800.t1
Basic Information
- Insect
- Nymphalis c-album
- Gene Symbol
- -
- Assembly
- GCA_905332345.1
- Location
- CAJOBY010000042.1:86483-107574[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.5e-05 0.0019 19.0 2.0 1 23 176 198 176 198 0.99 2 15 0.27 21 6.3 0.1 1 23 205 228 205 228 0.94 3 15 0.69 52 5.0 1.1 1 23 232 254 232 254 0.95 4 15 0.084 6.4 7.9 0.9 1 23 259 282 259 282 0.94 5 15 0.0043 0.33 12.0 0.4 1 23 286 309 286 309 0.95 6 15 0.00039 0.029 15.3 0.9 2 21 318 337 317 338 0.94 7 15 0.0049 0.38 11.8 0.2 3 23 351 372 350 372 0.94 8 15 4.4 3.3e+02 2.5 0.3 12 23 382 393 381 393 0.89 9 15 0.00011 0.0086 16.9 2.2 1 23 399 421 399 421 0.98 10 15 2.2e-06 0.00016 22.3 2.4 1 23 427 449 427 449 0.98 11 15 1.8e-05 0.0014 19.4 1.8 1 22 455 476 455 476 0.96 12 15 5.8 4.4e+02 2.1 0.3 12 23 477 488 476 488 0.89 13 15 2.8e-06 0.00022 22.0 0.6 1 23 494 516 494 516 0.99 14 15 6.3e-06 0.00048 20.9 0.1 1 23 522 544 522 544 0.94 15 15 1.9e-06 0.00015 22.5 0.8 1 23 550 573 550 573 0.98
Sequence Information
- Coding Sequence
- atgttgcagttattaaaaatagaagatGGTCTACCGGAGTACATATGTAGCTATTGCAGCACTTTGCTACTTAAATATGCAGCTTTCAAAGATAAATGTTGTGATACAAGATCAATTCTTACGTACGCATCGCAAAGACAGcTAACGACAAATGATATACGTGCTATCAATCAACAATATAAGCTTCCGTACACAATATCGACAAACTATCCGACAGTAAACTTGGAGTACACAGAATACACGGAACAGATTATAAAAGAAGAAAGCATTGTCATTGAATCCCCTCTTATAATGGAGTATGAGAGGGagcataaaaagaaaaaagttaagaagaaaaaagaaaaaagcagTACAGATATAAAATTTGAAGATGAGGTTTTCGATGATGTCGGTTTTGAATGTCATGACAGCGATATCAATGACGATGCAGAGATGAAAGATATAGAAGTAAATATTTTGAGTAAGGAGGAACAGCTGCTGGAAATTGAGGAGAGGAAAACATCATCAAATTACATCAATTCGTTCTATAAATGTGATTATTGTTATAAAGGTTTTATCATGGCTTCGACTTATAAGAATCATATGATGAAACATGACCCgGAACGCGGCGACTTCGTGTGCGACGTATGCAAGTCGCGTTGGACGGACGCACGTTCGCTCCGTGCGCACGTTCTAAACACGCACGAAAAGAAATACGTTTGCAAGCTGTGCGAGTACGTCTCTAGGAACATTCACCGAGCAAAGGAACATTTGAAATGGCATAAAGGATTTATGTTCGAATGCAAAATATGTGGAGCTCTATTCgcCAAGTCGACCAGTCACCTCACCCACATCCGTCTCCAGCACCCGTCGAGTCACGCTTGTGAGCTCTGCGGCGAGTCGTTCATCGGTGAATTCGGCTTGAGAATGCATAAGAAAAAAGTCCACCAGAACGCCGAAAGCTCAATATCTCAATGCGAGAGCTGCAATACGAAGTTTCGTTCTGCGAAGGCGTTAAAAAGACACCTGAAGTCGTCCAAGGATGAAGTTTGTGACGCAACCACGAGGCCCTGCCAGTATTGTGGCGATGGCTTCGAAACCGAAGATACATTGAAACAGCATTTGAAGGATAACCACGAAGACGAGAGCCTGTATTGTGAGGAGTCCAAGGCCACGCTGATGTACCACCAGCGAACGCACACGGGCGAGAAGCCGTACCACTGCACGCAGTGTCCGAAGAAATTTAGTATAATGCAACTACTTCAGATCCACATTAGGACACATACAGGAGAGAGGCCGTTCAAGTGTCAGAACTGCCCGAAGGCTTTCAAACACAAGGCAGCTCTCAACAGACATAATAGAGTACACACAGGTGTGAAGCCATACAGCTGCCCCCATTGCAGTAAATCCTTCACGCAGTCAAATTCGATGAAATACCACATCAATACGTCGAACGCAGCGCTACGTTACCACCAGCGGGTGCATACGGGCGAGAGGCCGTACCAGTGCTCCGAGTGCCCCAAGAACTTCACAATGCCGCTTTTTTTGcaaatacacATGCGCACCCACACCGGAGAGAGACCGTACGAGTGCCCGCAGTGTCCGAAGGCATTCAGTAACAAGGCTGCACTGTTGCGACATGATCGGGTACACACCGGAATCAAACCTTACGAATGCCCTCAATGTGGGAAATTCTTCACGCAATCGAACTCCATGAAGCTCCACGTGAAAACGGTACACCTCAAGATGCCAGCCCCCTACAAGAGCAAAAACAGACGAgccaaacagacaaacagacaagCTATGAATGTTGAAGTACAAATCGAGGAAGGAATATATCAGCCTCAGATCAAGACGGAACTCAAAGAATATGAAACTGACGGAGAGATATACCAAGGAGATGTCTATCAAGAGGTGTACCAAGATGACGATGGAGACATGATGTATGAAGAGGTGAAAGTGGAGTCATCGGAGATTGCAATGTACGGGAATGATGGTGAACCGGAAGTGTTGTATGAGGAAGTTTATGAAATAGAGGAAGTGTAG
- Protein Sequence
- MLQLLKIEDGLPEYICSYCSTLLLKYAAFKDKCCDTRSILTYASQRQLTTNDIRAINQQYKLPYTISTNYPTVNLEYTEYTEQIIKEESIVIESPLIMEYEREHKKKKVKKKKEKSSTDIKFEDEVFDDVGFECHDSDINDDAEMKDIEVNILSKEEQLLEIEERKTSSNYINSFYKCDYCYKGFIMASTYKNHMMKHDPERGDFVCDVCKSRWTDARSLRAHVLNTHEKKYVCKLCEYVSRNIHRAKEHLKWHKGFMFECKICGALFAKSTSHLTHIRLQHPSSHACELCGESFIGEFGLRMHKKKVHQNAESSISQCESCNTKFRSAKALKRHLKSSKDEVCDATTRPCQYCGDGFETEDTLKQHLKDNHEDESLYCEESKATLMYHQRTHTGEKPYHCTQCPKKFSIMQLLQIHIRTHTGERPFKCQNCPKAFKHKAALNRHNRVHTGVKPYSCPHCSKSFTQSNSMKYHINTSNAALRYHQRVHTGERPYQCSECPKNFTMPLFLQIHMRTHTGERPYECPQCPKAFSNKAALLRHDRVHTGIKPYECPQCGKFFTQSNSMKLHVKTVHLKMPAPYKSKNRRAKQTNRQAMNVEVQIEEGIYQPQIKTELKEYETDGEIYQGDVYQEVYQDDDGDMMYEEVKVESSEIAMYGNDGEPEVLYEEVYEIEEV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -