g9530.t2
Basic Information
- Insect
- Nymphalis c-album
- Gene Symbol
- -
- Assembly
- GCA_905332345.1
- Location
- CAJOBY010000016.1:1308399-1312525[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00063 0.048 14.6 1.3 2 23 78 100 77 100 0.93 2 22 5.1e-05 0.0039 18.0 1.7 2 23 124 145 123 145 0.97 3 22 0.13 10 7.3 0.5 2 23 150 171 150 171 0.95 4 22 8.8e-06 0.00067 20.4 2.3 1 23 176 199 176 199 0.97 5 22 3.6 2.8e+02 2.8 0.7 1 23 240 262 240 262 0.97 6 22 0.029 2.2 9.3 0.1 2 23 290 312 289 312 0.96 7 22 0.0014 0.11 13.5 5.5 1 21 335 355 335 357 0.95 8 22 0.0074 0.56 11.2 0.4 2 23 362 383 361 383 0.97 9 22 0.085 6.4 7.9 1.0 1 23 388 411 388 411 0.91 10 22 0.63 48 5.2 3.6 2 23 421 443 420 443 0.95 11 22 0.0032 0.24 12.4 3.1 1 23 449 472 449 472 0.95 12 22 6.9e-05 0.0053 17.6 2.5 1 23 476 498 476 498 0.98 13 22 6.6 5e+02 1.9 2.2 1 23 542 564 542 564 0.88 14 22 0.00036 0.027 15.4 0.2 2 23 592 614 591 614 0.93 15 22 0.00067 0.051 14.5 6.1 1 23 637 659 637 659 0.98 16 22 0.07 5.3 8.2 0.5 3 23 665 685 664 685 0.96 17 22 0.00092 0.07 14.1 1.5 1 23 690 713 690 713 0.92 18 22 9.4 7.2e+02 1.5 6.7 2 23 723 745 723 745 0.95 19 22 0.0021 0.16 13.0 1.5 1 23 751 774 751 774 0.94 20 22 1.3e-06 9.8e-05 23.1 2.8 2 23 779 800 778 800 0.97 21 22 0.0001 0.0077 17.1 4.0 1 23 806 828 806 828 0.98 22 22 0.0036 0.28 12.2 0.6 5 23 838 856 837 856 0.95
Sequence Information
- Coding Sequence
- ATGACAATATCCGAAAGACAAAACGCGGCGATGTTGCTTGAGAATACAACGATAAGACCATTTGTTTACTGTCGATATTTCTTCAAATGCTTTTTCTGTTCCGAGGAACACGCTGAAATAAACGCACTGCTTAAACATAGTTCTACTCATGATATGCCCGCCCATGCGGACATTCTCAAAGACCTCTTACCTAAGGGGAAGCGCACTGTTAAAGTTGATATATctgatttaaaatgtaaactatGCTTTAAGAAATTCTCGAATCTTGACCAAATAAGGAGACATTTAGAACTTGAACATAATAAAATCTTCACCAAGTCTGGTAATGGTATTGTTGCTTATAATTTGAGCTCCAAGGACGGACAATTATCATGTCATATCTGTAACAAAATCTTCCAAACATTTATACTCTTGAATCGTCATATGAACGTGCATTTTAGTAACGCTGTTTGCGAAACTTGTGGCGCCGGTTTTATGACGCATCAAAGACTTATACAGCACAAGGAAATTCACTCGCCTGGTGGATATCCGTGCAATCGATGCAATAAAGTGTATACCACACATTCTAATCTAAAATACCATATAGAAAAGGCACATGAAGGCCGTAGATCGTGTTTTGAGACAAGTATTTGGCAAATGACAGTACCAGAGAGAAATAATGCAgctttgtttttgatttatacAACTGTGAGACCTTTTATATACATGGGCTCttgtttcaaatgtttattCTGTATGCAGTACTATTCAGAAATTTCTGCTTTATTGGAACACACGTCAACTCACgaaattagtaataaaagtaTTGTTCTTGAGAAGTATATCTCTAAAGGTAAAAGAACTTTACAAGTGGATATATCACAATTAAAATGTCGTTTATGCGACCGAGCGTATCCGAATTTAAACGCAATTCGCgatcatttaaaaatcgaacatgaAAAACAATTCTTACCAGCCAGTAATGGGATGACGGAATACAATATGGAGGTCAAGGACGGTTCATTTAAATGTCATGTTTGCGATAAGAATTTTTATTCGTTTGCGTTATTAAATTCTCATATGAATTGTCATGTAGGTAAGGTTGTGTGTGAAAACTGTGGAGCCGGGTTTCTTAACCAACACCTATTGATGAAACACCGGGAAACGCATTTGACTAAGAAATTTAATTGCGTGCAATGCGAAAGTGTGTTTTTTAAAAAGAGTCAATTGAAATACCATAATGAAATCGTTCATATGGGCAAAGAAAGAGTTAAGCCAAAGAAATGTCAACTTTGTTCCCAAACGTTTAAGGAGCATTATAGTAAAATGATACACCTGAAACAGGTTCACGGAATAATAAGGAGTTTTCCATGTCACATTTGTAAATCAAATTTTAGCACACGACGCGCTTTGACAGAACACACGACGAGGTATCATACCGAGAAGTTTAAATGTGAAGTGTGCTCTAAATGCTTTGGAATAGAGTCGAAATTGAAGCAGCACATGCGTGGACATACCGtgACGCGTAGAGATCTACCGAGAAGTAGTAAATGGTCGATGACGCTAGCTGAGAGAATAAATGCAgcgcatattttaaaaaacacaacTGTCACGCCGTTCACCTATCTATTGTTTCCGAGCTCctacaaatgtttgttttgcgATGTAAAGTCTTTTGAAATTCACACCTTACTGGAACATTCTAGAAGCCACGTTGTTCCAAATCACAACGAAATTCTAAAAGATATTTTGAAGAAAGGcaagaaaaaaatcaaagtgGATATATCGAATTTGAAATGTAGGATATGCGATCGATCGTTTGTAAGCTTGGAAGATGTTCAGAAACATTTGGCAAATGTACACGAGATCGTCTTCACAGATGCTGGTGTCGGTATGATTTCGTTCAACTTAGAAACGACTAACGAACTATTCACATGTCACATTTGTTCGAAAACATTTCACAGTTTTTTCCTCTTAAACAAACACATAAGCGTACATTACAGTAATGCGATGTGCGACTTATGTGGGAAGGGATTTTTGTCTTATCAGAGATTGATGACGCACCTGCAAAGCCATCGCAACGGGACATACCCTTGTGACAAATGTAAGAAGACCTTCCCGAGTATTTCAAAACTTAAGTACCATAACGATAAACTGCACGGAAATTTGGGTAAAATTAAATTGGCAAAATGTCACAAATGTTTGGCGAGATTCGAACATCACTACGAAAAGATCAAACATTTGAATGAGACACATGGCATTTCATTCACATTCACATGCGATACTTGCAATTCCGTGTTTAAATCTCGTCACGCTCTCAATATGCACGTGGTTAAGGATCACACACAGAATATTTCGTGTGATATATGCAAGAAGACATTTTCGGAACGGTATCATTTGAAAAAGCACATGGCAACACATAGTCAAGAGAGGAATTTTGTATGTCCGTTATGTAAGAAGTGTTATAGATACGAGAAAACGTTGAAACAACATATAAAACTACATAATCCTGATTGGAAATTTTCTTATTCCATCTGTTGGACAAGCTTCTCCACTAAAAGCGATTATAAGAGTCATAAGTCAATGcatttgtga
- Protein Sequence
- MTISERQNAAMLLENTTIRPFVYCRYFFKCFFCSEEHAEINALLKHSSTHDMPAHADILKDLLPKGKRTVKVDISDLKCKLCFKKFSNLDQIRRHLELEHNKIFTKSGNGIVAYNLSSKDGQLSCHICNKIFQTFILLNRHMNVHFSNAVCETCGAGFMTHQRLIQHKEIHSPGGYPCNRCNKVYTTHSNLKYHIEKAHEGRRSCFETSIWQMTVPERNNAALFLIYTTVRPFIYMGSCFKCLFCMQYYSEISALLEHTSTHEISNKSIVLEKYISKGKRTLQVDISQLKCRLCDRAYPNLNAIRDHLKIEHEKQFLPASNGMTEYNMEVKDGSFKCHVCDKNFYSFALLNSHMNCHVGKVVCENCGAGFLNQHLLMKHRETHLTKKFNCVQCESVFFKKSQLKYHNEIVHMGKERVKPKKCQLCSQTFKEHYSKMIHLKQVHGIIRSFPCHICKSNFSTRRALTEHTTRYHTEKFKCEVCSKCFGIESKLKQHMRGHTVTRRDLPRSSKWSMTLAERINAAHILKNTTVTPFTYLLFPSSYKCLFCDVKSFEIHTLLEHSRSHVVPNHNEILKDILKKGKKKIKVDISNLKCRICDRSFVSLEDVQKHLANVHEIVFTDAGVGMISFNLETTNELFTCHICSKTFHSFFLLNKHISVHYSNAMCDLCGKGFLSYQRLMTHLQSHRNGTYPCDKCKKTFPSISKLKYHNDKLHGNLGKIKLAKCHKCLARFEHHYEKIKHLNETHGISFTFTCDTCNSVFKSRHALNMHVVKDHTQNISCDICKKTFSERYHLKKHMATHSQERNFVCPLCKKCYRYEKTLKQHIKLHNPDWKFSYSICWTSFSTKSDYKSHKSMHL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -