g9535.t1
Basic Information
- Insect
- Nymphalis c-album
- Gene Symbol
- -
- Assembly
- GCA_905332345.1
- Location
- CAJOBY010000016.1:1326091-1331664[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0075 0.57 11.2 0.6 2 23 31 52 30 52 0.97 2 27 0.018 1.4 10.0 0.1 1 23 56 78 56 78 0.95 3 27 1.5 1.2e+02 3.9 0.7 1 15 83 97 83 106 0.78 4 27 0.012 0.92 10.6 0.6 1 23 112 135 112 135 0.97 5 27 0.0021 0.16 12.9 1.2 1 23 142 165 142 165 0.98 6 27 0.00036 0.027 15.4 0.7 1 23 172 194 172 194 0.97 7 27 0.009 0.68 11.0 0.8 1 23 268 291 268 291 0.97 8 27 0.4 31 5.8 0.4 1 23 369 391 369 391 0.92 9 27 0.055 4.2 8.5 0.6 2 23 416 438 415 438 0.96 10 27 0.0034 0.26 12.3 2.8 1 23 460 482 460 482 0.98 11 27 0.027 2 9.5 4.6 1 21 486 506 486 508 0.95 12 27 0.12 9.2 7.4 0.1 3 23 515 536 513 536 0.91 13 27 0.046 3.5 8.7 2.9 1 23 587 609 587 609 0.95 14 27 0.26 20 6.4 0.3 2 23 633 655 632 655 0.95 15 27 0.0063 0.48 11.4 3.3 3 23 679 699 678 699 0.98 16 27 0.0019 0.14 13.1 3.4 3 23 705 725 704 725 0.97 17 27 0.0059 0.45 11.5 2.4 1 23 732 755 732 755 0.97 18 27 5.5e-05 0.0042 17.9 2.0 1 23 761 784 761 784 0.97 19 27 0.013 0.96 10.5 0.7 1 23 790 813 790 813 0.97 20 27 0.00041 0.031 15.2 0.5 1 23 819 841 819 841 0.97 21 27 8.6e-07 6.5e-05 23.6 1.0 1 23 847 869 847 869 0.99 22 27 0.22 16 6.6 1.7 1 18 875 892 875 892 0.95 23 27 0.2 15 6.7 0.6 2 23 1000 1021 999 1021 0.95 24 27 0.062 4.7 8.3 3.9 1 20 1043 1062 1043 1065 0.92 25 27 0.026 2 9.5 0.0 3 23 1071 1091 1069 1091 0.96 26 27 0.14 10 7.2 0.2 1 23 1096 1119 1096 1119 0.96 27 27 0.0041 0.32 12.0 1.0 1 22 1125 1146 1125 1148 0.87
Sequence Information
- Coding Sequence
- ATGCGTAGCCACGTAATTGATCACGGTTTCGAGTTCGATACGTCCCACCCGGACGGCGTTCTACCGTTCTTCTTGGACAAGGAGGCATGGAAATGTTTGATCTGTCGTGAATCGTTTAATAATTTCCTAAAGCTTTACGAGCATATGAATATACATTATCAACATTATATTTGTGCGACATGCGGCAAAGGTTATATGACGGCACCACGTTTGCGGAAGCATTCCGAGGTTCATATAAGTGGAACGTTTCCGTGTGATAAATGTAGGCAAGTTTTTACGATGCGAGCTGCCCGCGATTATCATAAAGCTCACGCCCACGCTAAAGGACCGCGCTACGAATGTCCACAGTGCAATATGAGGTTTGAGGGTTATTATGAAAGAatgaatcatttaaataaagaacatagAGAAAAAGAAGTATTGTATAAATGTGCCCATTGCGAGTTATCTTTCAAAACGAGCGGGAAAAGGGCTATACACGTGCGATCAGTCCATTTTCCACAACAGCGTAACTTCGCCTGTCCCTTCTGTAAATGGTTATTTAAAACTGGCTATGAATTAAAAAGGCATATGGTTAAACATACGGgtCCCGCTCTTGCGGATTCAGAGGGGGTTAAAGTTAGACGGGTTAGGAAGTTAAAGGAGAATGTTTGCGCCAGGCAGAAACGACGACGGCGGCGAGCTAACAACGAATTGCCGGAGGAATCCGAGAAAAGAATAGCGAAAACAATGATGCGTAGAAACGCAATGACGATTCTCGAATGTTCCACCGCTTGGGCGTTCCGTTGGTTCCAAAGCGCGTATTATTGCTCGTACTGTGATGTTAAATTCGTGGATCCATTACTTTTACACGGTCACGTTAGCACTTTTCACATTGCCGATGCACCTACGAAGCGAATATTTTCAAAACTTACCGAAAATAATATGGTTAAGGTAGACGTATCTAATGTACATTGTAGGATTTGCAATTgcgATGGAGTCGCAAGGGAAATAACGGTTAAAATTGAATGGAAAAAAGCACGAAGAGCTACGGAAGATAAAGCAAATGCCGCCTTGCTGCTCGAATGTTCAAATGCGGTGGCGTTTAGGTGGATGCGTGGGAAATTTATGTGTGCATACTGCCCCAAAATATGCGCAAATGTTAATGAAATACGTTCTCATAGCCAAGCGCACGATAAACTTCTAATATTCCATAAACCAGAAGTTCGAAATTCGTTTCCACTTAGAAttgatataacaaatttaaaatgcagCCTATGCGTCTTCAGTTGTATAAGCTTAATGGACTTGAAAGCTCACTTGATAACGGATcatgaaaaaaaattcaactctaAATATAGCGATGGTGTAATTCCATTCGTTTTGACTAGCTCCGAATATCGCTGTGTTCATTGCAACACATTGTTTGAAAGCTATATGAACTTATTCAGCCATATGAACGAACATTATCagagttttgtttgttatacGTGCGGAAAAGGATACTCTGCCAAGCACAAGTTAAGAGCGCACCAGAAGTGTCACGAAACTGGGAATATTGCTTGTCCTAAATGCGATCTCGTATTTGTAAATCATGTTGTCAAAAATAGACATGTCGCCATGATTCACGGTCCGAAAAAGCGGTATCGTTGTCCTATATggACGATCAAGACAGTTAATTGGAAACGGAGACGCAGGTTCTATAACGATCATAGAGATAACGCGGCAATTATAATAGAATACTCTAATGCCTGTCCTTTCCGATGGAAACGCGGCGCATTCGCTTGTTCGCACTGCCCGAGGACGTTCGGTCATTTTCAGGATGTTTTCAACCACGTTCAGGAACATAGTAATCGTCTTGAAGCTATGAGATACGCACGGCCGTATGATAACGTTAAGATAGAAATAAGTAAtcttaaatgtgttatttgtcACAATAGTATGAACGACTTGGAACAACTTAAAGAGCATTTGCTGATCGTTCATCAGAAGCCGATACATAAAGAATTGAGCTTGGGTGTGACACCATTCATTCTTCAGAATAAAGAAATGCTCTGTACGCATTGCGATGAACGTTTCTCTTTGTTTTCTAGATTGAATAGTCACATGAATCAACACTATCCAAATAACATTTGCTTTCATTGTGGGAAATCATTCTCAGCGGTTCATCGGTTGAAAGCACATCAGTTAACTCACGAATCGAACGATACGGAACACAAATGTACGAAATGTGACGAAATATTCGATACTCGAGCGTTGAAAAACTATCACATTAATACAACACACGCGCCGGAAAATCGCTACAGATGCCCGTATTGTAATTTATCGTTTAAACGTTATTCGGATCGTTTGAGACATTTGAAACTGTTGCACAACCAAAGCGTTGAATATCCATGTCATTTGTGTTCGGCGATTTTTGCCATGTCCGACCAGAGAACGAAGCATATTAAAAACGTCCACATAAAACATAAGCAATTCCAGTGCGACTTTTGTCCGAGTAAATTCGTAACCGCTGGACAGTTAAAGAATCATCTTGTGAAGCATTCGGGACTGAGAGAATATCAGTGCAGTGTTTGTAAAAAGAGCTACGCAAGGGCTAGAACTTTAAAAGAACATATGAGGATACACAATAATGATAGACGATTTGTTTGCGAGTATTGCAATAATGCCTTCATCCAAAAGTGCAGTCTTAAAAgAGGAAACGATGCTGATGTTGAGATTAAACAAGAAAAGGGCGTTAGTGCAGAGGATAACACGAAGATGTCAGTCACCAGGATAGATAGAACTAATCGGGGAAAAGAGGACAGACTTACTACCTTTAGAAATAACATAGCAATTATCATGAGTACATGTACGGCGTACCCTTTTAAATATGGGAAAGGATCGTATTTATGTTTCTTCTGCAAGAACACATTTTTAGAATCGGAAAAATTAAGAGAGCATACCCAAAAAGAGCACTCCGGTTTAATGTTTCAGTTGAAGAAATGTGAACCTCTGAAAATGGACTTTGCGATCACATATTGTAAATTGTGTGGCATTCATATTGATAGTTACGTTTCATTGAAATCACATTTACTGGAACATGGGAAAGAGCTGGACAGTTCGTACGGTGAACCGATACTTCCCTATAAACTGATTAATGACGAATATTTCTGTCAGGTTTGTGGAAAACATTATGAAACTTTCCTTAGTCTCCATAAACATATGCCCAGTCACAGCGAACATATCATTTGCGAAACATGCGGTGTTGGTTTTGCTACAGCTCAGCGTATGCTCAATCATGCGCGGACACATGAAAGGACGAATTACCCATGCCAGCATTGCGATGATACGCTGGAGTCATATGCGTCGCTCGTGACTCATATAGATAGAGTACACCGTTTAAATAAGAGATATAAATGTCCTATGTGCGACGAGACGTTTACCAGTTTAAAAGTTAGAAAAAGACATTCGAGTCAGGTCCACGGATAA
- Protein Sequence
- MRSHVIDHGFEFDTSHPDGVLPFFLDKEAWKCLICRESFNNFLKLYEHMNIHYQHYICATCGKGYMTAPRLRKHSEVHISGTFPCDKCRQVFTMRAARDYHKAHAHAKGPRYECPQCNMRFEGYYERMNHLNKEHREKEVLYKCAHCELSFKTSGKRAIHVRSVHFPQQRNFACPFCKWLFKTGYELKRHMVKHTGPALADSEGVKVRRVRKLKENVCARQKRRRRRANNELPEESEKRIAKTMMRRNAMTILECSTAWAFRWFQSAYYCSYCDVKFVDPLLLHGHVSTFHIADAPTKRIFSKLTENNMVKVDVSNVHCRICNCDGVAREITVKIEWKKARRATEDKANAALLLECSNAVAFRWMRGKFMCAYCPKICANVNEIRSHSQAHDKLLIFHKPEVRNSFPLRIDITNLKCSLCVFSCISLMDLKAHLITDHEKKFNSKYSDGVIPFVLTSSEYRCVHCNTLFESYMNLFSHMNEHYQSFVCYTCGKGYSAKHKLRAHQKCHETGNIACPKCDLVFVNHVVKNRHVAMIHGPKKRYRCPIWTIKTVNWKRRRRFYNDHRDNAAIIIEYSNACPFRWKRGAFACSHCPRTFGHFQDVFNHVQEHSNRLEAMRYARPYDNVKIEISNLKCVICHNSMNDLEQLKEHLLIVHQKPIHKELSLGVTPFILQNKEMLCTHCDERFSLFSRLNSHMNQHYPNNICFHCGKSFSAVHRLKAHQLTHESNDTEHKCTKCDEIFDTRALKNYHINTTHAPENRYRCPYCNLSFKRYSDRLRHLKLLHNQSVEYPCHLCSAIFAMSDQRTKHIKNVHIKHKQFQCDFCPSKFVTAGQLKNHLVKHSGLREYQCSVCKKSYARARTLKEHMRIHNNDRRFVCEYCNNAFIQKCSLKRGNDADVEIKQEKGVSAEDNTKMSVTRIDRTNRGKEDRLTTFRNNIAIIMSTCTAYPFKYGKGSYLCFFCKNTFLESEKLREHTQKEHSGLMFQLKKCEPLKMDFAITYCKLCGIHIDSYVSLKSHLLEHGKELDSSYGEPILPYKLINDEYFCQVCGKHYETFLSLHKHMPSHSEHIICETCGVGFATAQRMLNHARTHERTNYPCQHCDDTLESYASLVTHIDRVHRLNKRYKCPMCDETFTSLKVRKRHSSQVHG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -