g15361.t1
Basic Information
- Insect
- Nymphalis c-album
- Gene Symbol
- Pdk
- Assembly
- GCA_905332345.1
- Location
- CAJOBY010000031.1:263207-279775[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-09 1e-06 28.8 0.0 2 42 14 53 13 56 0.90 2 2 3.1 3.1e+03 -1.6 0.0 26 39 354 368 350 372 0.82
Sequence Information
- Coding Sequence
- ATGATGCCGCCAGTAAAGGGTCAGATGTTTAGATATTCTGAAGCCAATATGGAAGCAGCTATAGAAGAATGCAGGCGGGGCGTTCCGACGGCTACTGCGGCGAAAAAATTTGGAGTGCCACGAGTAACTTTACTGAACAAAGTCAAGGGAAAGACACCCAAAGATAAAGAGAAAATGCCCTGGTTGAACGCTTGCGAGAGGAAATCGTTTCTATTCCTGAGGAAGGAGCTGCCTGTGAGgttAGCGAATATTATGAAAGAGATAGCATTACTCCCGGAGAACTTGCTGCGCATGCCTTCCGTGGGCCTCGTCAACCAGTGGTACGAGAGGTCGTTCGAGGAAATCATCGAATTCGAAAAGAAGGAGCCGGAACCGCCTGTTCTTTCCCAGTTTTGCGAGCGCCTCGTCCTGATACGAAACCGTCACGCGGACGTCGTGCAGACGATGGCGCAGGGCGTCCTCGAGCTGAAGGAGTCACACGAGGTGGAACCGGGCATCGAGAACTCCATCCAGTACTTCTTGGACAGATTCTACATGAGCAGGATATCCATCAGGATGCTTATCAATCAGCACACTCTACTGTTCGGCGAGCAGCTGGGCGCGCGGCAGGCGTCCGTGAACGGCATGGGCAACGGCGGGCGACACATCGGGTCCATCGACCCCGCCTGCGACGTGGCGGCCGTCGTGCGCGACGCCTACGAGAACGCGCGCTTCCTCTGCGACCGGTACTACCTCGCCTCGCCCGAGCTCGAGCTGCTGGAGGACGGCGCGCCAAGCGACCGTCCGATGCCGATAGTGTACGTGCCGTCACATCTCTACCACATGCTGTTCGAGCTGTTCAAGAACGCGATGCGCGCTGTCATGGAGACGCACGAGAACAGCCCGCCCCCCATACAGGTCAACCTCGTCCGCGGCAGGGAAGACGTCTCCGTCAAGATGTCAGATAAAGGTGGCGGTATCCCGCGCAGTGTGTCCGACCTGCTCTTCAAGTACATGTACAGCACGGCGCCGCAGCCGTCCAAGTCGGACTCGCACACCGTGCCGTTGGCTGGCTATGGTTACGGGCTACCCATATCTAGATTATACGCCAGGTATTTCCACGGCGACTTGGTCCTCATGTCGTGTGAAGGGTTCGGCACAGATGCAGTTATATATTTGAAGgCTCTATCGAACGAAGCAAACGAACTACTACCGATATTCAACACGACCTCCTCGAAGTTCTACCGCACGACGCCCGCGCCCGCCGACTGGTCGGCGCCCGTCCCCACGCAGGCGTGTCGCCGGGACAAGCCGTCCCTCTCCCACAAGGCGTAG
- Protein Sequence
- MMPPVKGQMFRYSEANMEAAIEECRRGVPTATAAKKFGVPRVTLLNKVKGKTPKDKEKMPWLNACERKSFLFLRKELPVRLANIMKEIALLPENLLRMPSVGLVNQWYERSFEEIIEFEKKEPEPPVLSQFCERLVLIRNRHADVVQTMAQGVLELKESHEVEPGIENSIQYFLDRFYMSRISIRMLINQHTLLFGEQLGARQASVNGMGNGGRHIGSIDPACDVAAVVRDAYENARFLCDRYYLASPELELLEDGAPSDRPMPIVYVPSHLYHMLFELFKNAMRAVMETHENSPPPIQVNLVRGREDVSVKMSDKGGGIPRSVSDLLFKYMYSTAPQPSKSDSHTVPLAGYGYGLPISRLYARYFHGDLVLMSCEGFGTDAVIYLKALSNEANELLPIFNTTSSKFYRTTPAPADWSAPVPTQACRRDKPSLSHKA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -