g9551.t1
Basic Information
- Insect
- Nymphalis c-album
- Gene Symbol
- -
- Assembly
- GCA_905332345.1
- Location
- CAJOBY010000016.1:1413588-1417989[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.9e-11 4.9e-08 33.0 0.0 8 36 220 249 215 252 0.91
Sequence Information
- Coding Sequence
- ATGAGTTTTAGTGTAGTTGATGAATTCAAAGTTGAAGAATGTCTACGTAAATGTAAATGCTGCTTGGATGATAAGGAACTAAAAGCGCTTTGGGACGAACACGTCTACGACGGTGAACAAGAAATATACGGCCTACTCTTGGTTGAATGTTTCGCTTTACCGTGGGAGCAATCGGAAGATGAAGAATTCATTTGTAAATTGTGCGTCTCACGACTTCGTGAAGCTGTTTGTTTTAAACAGGAAATATTATCTACAGAAGAAATTTTATCAAATGaaattatcacCAAAGACAATCACTGTGCATCCACGGAAGACAATGACACAACTATCCAGTATATTACTCAAGATGAATTACAACAATACACCTTCTTAGAAGGTGTGATGAGCGACAGTAATGACCCGCAAGAGGTCGCGACCTCGCTCCCCTCCGTTACTCCGGAGGACGGATATGAGCAAGTGGAGTATCTCGAAATGGAAGACCAAACCTCACAAGaaaAAATAGTAGTTTTGGAATTAAATCCAGAAGAGTCCAGCCAGGACTCTTCGATCCCAGAGGCTCTCAGTCCCCAGCTGCCTAAAAGGAAATGgccgaagaagaagaagaagagtgAACGCACGAAGCAGTACAAGCAGTACACCCTGCAGGACATCCGGTGCGCCGTGGAAGCGGTCCGTAGTGGGGAGATGTCTCTAGCGACGGCAGCGACCACATACGGCGTTCCCAAGAAAACCCTGGCCGTGAAGGTCAATGTTGATGGTGGTGACGGCGACGAAACCAAAGAATCGAACAACGAGAAACACTTCCAATTGATCGAGGAAATAAAGACGATACTACTACACACGACAGCGATACCGTTCAAGACGAAGACGACCAGGTACTACTGCTTCTACTGCTCCACCGAAGGACCGACTTTCGAAGATCCAGACGATCTAAGGAAGCACACGAGAACGAAACACGTCCACGAACGAACGAAGATCGAGCTGTACATGCGGCCGCAGTGGATGAACGAGATCATAAAACTGGACGTCGATGACCTTCACTGCAGCACCTGCTATATGCTGCTGCCGGACTGGAACCACGTATTCGTCCACCTCGCGGAAGAACACGACCTCGAATTCGATCAAGCTTATTCGAAGGTGATACCCTATGCCCTCGACTCAGATCTGAAGTGTGTCCTCTGCCATCAGAATTTCCACAATTATGGACACCTCGACAGTCACATGAATAATCATTACAGTAATTACATATGCTATGAATGTGGGGACACGTTTCTATCGGCTACTCGGTTGGATAAGCACTTGAATGTCCACAAAGTGGGCAGCTACCCCTGTGAGATATGCGACAAAGTGTTCACATTAGACAAATATCGGGCCAAGCATATCAGCCTCGTTCACAATCAAGaaagtacaataaaatgtttgtattgtcAAGAGAAGTTTGTAGGATTGTTTCAGAGACATGTGCATGTGACGGAGCAGCATAAGGATAAAGTGAAAGTGTTGACGTGTGAATTCTGTGGTAATTGTTATACGTGGAAGCCATACTTCCTAGCTCATATGAAGAGACGGCACGGTGCTGAGAAGAAACATCAGTGTAAACATTGTGATAAAACTTTCTTAATGAAATATGAATTGAAGAACCATATGGTCCGTCACACTGGTGAGAGAAACTACCTGTGCGGTCTGTGTGGTGAGAGCTTTACGAGGATGATCACCTTGAAAAAACATTGCCAAATGCATAAAGAATTTAATACAATGatcgaaaattaa
- Protein Sequence
- MSFSVVDEFKVEECLRKCKCCLDDKELKALWDEHVYDGEQEIYGLLLVECFALPWEQSEDEEFICKLCVSRLREAVCFKQEILSTEEILSNEIITKDNHCASTEDNDTTIQYITQDELQQYTFLEGVMSDSNDPQEVATSLPSVTPEDGYEQVEYLEMEDQTSQEKIVVLELNPEESSQDSSIPEALSPQLPKRKWPKKKKKSERTKQYKQYTLQDIRCAVEAVRSGEMSLATAATTYGVPKKTLAVKVNVDGGDGDETKESNNEKHFQLIEEIKTILLHTTAIPFKTKTTRYYCFYCSTEGPTFEDPDDLRKHTRTKHVHERTKIELYMRPQWMNEIIKLDVDDLHCSTCYMLLPDWNHVFVHLAEEHDLEFDQAYSKVIPYALDSDLKCVLCHQNFHNYGHLDSHMNNHYSNYICYECGDTFLSATRLDKHLNVHKVGSYPCEICDKVFTLDKYRAKHISLVHNQESTIKCLYCQEKFVGLFQRHVHVTEQHKDKVKVLTCEFCGNCYTWKPYFLAHMKRRHGAEKKHQCKHCDKTFLMKYELKNHMVRHTGERNYLCGLCGESFTRMITLKKHCQMHKEFNTMIEN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01507714;
- 90% Identity
- iTF_01078692;
- 80% Identity
- iTF_01078692;