g11321.t1
Basic Information
- Insect
- Nymphalis c-album
- Gene Symbol
- -
- Assembly
- GCA_905332345.1
- Location
- CAJOBY010000019.1:11668795-11673287[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-05 0.016 15.4 0.0 4 32 176 205 173 205 0.89 2 2 2.2e-07 0.00022 21.3 0.4 7 32 214 239 213 240 0.97
Sequence Information
- Coding Sequence
- aTGCCTGGAACAAACTCATTTGAAGTGAAATGCGAACCTCTATCAGATGAAGAAGAAAACAACGCACTATACGccaaaacttattataatgaCCACCCGTCGACACTGGACTACATTCCAATAAAGCTAGAACCGAGCCCGAGAGTTGATGAAAATGCCTCGTCCGGTCTGCTACATCATTTACAGTGCGTGCAAGGTTCGCTGGAGGAGCTCGCCCCCGCCCCCGCGGGCCCCGCCGCTACGCCCGTGTGCGAGCACGTGCCCGCGCCGCGGGACGCCTCGCTCGCTACGCTCGAGACCGCGCACGCACACGATGTGGGATCTTCGCTCATAAGTCGACACATGGAAATGATGAACACGACCGAAGTGGCGGATTCAGCGGAGTTCGTTCCGCTCATGTCCATCAAAGACGAGCCCACGTCTGAGGGAGAGCAGCATCAGTTAAGCAGCGACGACACGAGCGATTCGAACGGCCCCTCGCAGGAGATGGGCAGCCGCGGGAGCCCTAAGAGCTGGACTCAGCGGGACATGGACCAAGCTTTGGAGGCGCTTCGGAAGCATCATATGAGTCTCACTAAGCGCGCCGCCGCGCAGTTCGGCATCCCCACCGGTACGTGCCCCGTCCCCTGGCTGACTGGCGCCGCGCTCGCCGCCATCCGCTGCGGCGCCGCCTCCGTGCAGCGCGCCGCCGCGCAGTTCGGCATCCCCACCGGTACGTGCCCCCGTCCCCTGGCcgacgttaggactcattgccGAATGGGGCTCTTATAA
- Protein Sequence
- MPGTNSFEVKCEPLSDEEENNALYAKTYYNDHPSTLDYIPIKLEPSPRVDENASSGLLHHLQCVQGSLEELAPAPAGPAATPVCEHVPAPRDASLATLETAHAHDVGSSLISRHMEMMNTTEVADSAEFVPLMSIKDEPTSEGEQHQLSSDDTSDSNGPSQEMGSRGSPKSWTQRDMDQALEALRKHHMSLTKRAAAQFGIPTGTCPVPWLTGAALAAIRCGAASVQRAAAQFGIPTGTCPRPLADVRTHCRMGLL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -