g18167.t1
Basic Information
- Insect
- Nymphalis c-album
- Gene Symbol
- -
- Assembly
- GCA_905332345.1
- Location
- CAJOBY010003980.1:4144-4647[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.6e-13 6.6e-10 39.0 0.0 3 38 16 51 14 56 0.93 2 2 4.7 4.7e+03 -2.1 0.0 14 22 142 149 135 149 0.68
Sequence Information
- Coding Sequence
- atGTCTGCATCCCATAAATACAGCAAGAGAAAGAAGTGGGAGAAGGAGGATATGTCCGCTGCGATTATCGCTGTACAAGAAAAGAAAATGGGATACTTGAAGGCAGCTAAACACTTTAACGTTCCCAGGTCTACCCTCTTTCGATTTATTAATGACAATGACTCCTCGACTGAAtctgtaattaataaagttattggtCGAAGGCCAGTTTTGGGTACAGATATTGAAAAGATGCTGGTTGAGTATATATTATCAATGGAGAATAAATTTTATGGGCTGACCAGAATGGATTTGCGTCGGTTGGCATATCAATTagctacaaaaaataatatacaaaacgaTTTTAGGGATGGATTTGCTGGAAGATACTGGCTGAAGGGATTTTTAAAACGACACAAGGAAATTTTGTCCATAAGACAGCCAACTGGAACTTCTCAAGCAAGGGCCAATGGATTCACTAAAGAAAGAGTGGACGAGTTCTACGACAACATTGACAAAATCTAG
- Protein Sequence
- MSASHKYSKRKKWEKEDMSAAIIAVQEKKMGYLKAAKHFNVPRSTLFRFINDNDSSTESVINKVIGRRPVLGTDIEKMLVEYILSMENKFYGLTRMDLRRLAYQLATKNNIQNDFRDGFAGRYWLKGFLKRHKEILSIRQPTGTSQARANGFTKERVDEFYDNIDKI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -