Basic Information

Insect: Nylanderia fulva
Gene Symbol: ush
Assembly: GCA_005281655.1
Location: NW:626947-688383[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0015 0.12 12.6 0.0 2 20 258 276 257 278 0.93

2 8 3.2e-05 0.0026 17.8 1.3 1 23 313 335 313 335 0.98

3 8 0.073 5.9 7.3 1.6 3 20 381 398 380 400 0.93

4 8 0.011 0.88 9.9 4.4 2 21 617 636 616 637 0.94

5 8 0.051 4.1 7.8 0.0 3 20 666 683 664 685 0.91

6 8 0.013 1 9.7 0.0 2 23 724 745 723 745 0.95

7 8 0.0068 0.54 10.5 1.4 1 23 751 773 751 773 0.99

8 8 0.072 5.7 7.3 0.5 3 21 870 888 869 889 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0015	0.12	12.6	0.0	2	20	258	276	257	278	0.93
2	8	3.2e-05	0.0026	17.8	1.3	1	23	313	335	313	335	0.98
3	8	0.073	5.9	7.3	1.6	3	20	381	398	380	400	0.93
4	8	0.011	0.88	9.9	4.4	2	21	617	636	616	637	0.94
5	8	0.051	4.1	7.8	0.0	3	20	666	683	664	685	0.91
6	8	0.013	1	9.7	0.0	2	23	724	745	723	745	0.95
7	8	0.0068	0.54	10.5	1.4	1	23	751	773	751	773	0.99
8	8	0.072	5.7	7.3	0.5	3	21	870	888	869	889	0.92

Sequence Information

Coding Sequence: ATGAGCATACTTTTATGGCGTCAACGTAGAGCTGCTCTCTCCTTATCGAGGGAGGATGAAGAATGGAGTGACTCGGAAAAGACCCCGTCGGTGAGCAGCGGCGTGGACGGTGGCGGATCCGCGGTGTCGAGTCCAATCGCGCCACCAGTAGTCGAGGAGGACTCGAGTTTACCACCTCCTCCGAGACTCAACCCCACGTCATCCTCGACCAGTTCCTCGGCCAGTGAGGATATCAGACTGCGCCTGAGCGTGCTTTCGGAGGATACTAGGAAGCGTCTGGTCAGCCTTACCGAGGACATCGAGGTCGCCAGGAGCATACGAGGAGACCGTCATGGGCCATCGTCTAGAAACGTACGAACGCGAGAGTCGAGTCCCAAGGACGTCGATGAGGAGCAACAGGCTGTTAAGGACGAAGAGTGTCAGCCGAGGCCGTCGTCGTCCACTGCCATTAGGAGACGAGACTCCGTCTGCCGCAGGGACTCGGAGGATTCCGTCACCGCGGTGGCCACCGAGGCCAAGAGGATGAGACTCGACGACGAGGCAACACCAAGACTGAGACTCAATGCTAGTCTGGCGACGGATCCCGCATTGCGACCCGCTGCTGTCGCCGCGCTTACCGTGAAGCCGGAGAACACGTCGCCGCCGAACCAGACGCCGCCGCTTCCAGCCGGGCTTCAGAACGCGATCGCGTCGGGCCGACTGTTCGTGCTGCCAACTGATGGCAAGGAGACGATCACGGTGGAGCCGGCGAGACCCCCGCAATTTGCCCTGACCTGTCCGCCGTGTGGTATCCGGTTCAGCTCGCCCAGCACCCTCGAGGCTCATCGCACCTTCTACTGCGCCCATCGACCGCGCGCGGACGAGGACGCGACGaacgacgaggacgaggacggcGGCGGCGGAAAGTCCGGTGGCAAGTTCGAGGCGCGAAAGGCGTACGCGTGTCCGCACTGCTCGTACAGCGCCGACAAAAAGGTATCCCTGAATCGTCACATGCGGATGCACGCAACCTCGCCGGTGCCGACGACGATACCAACATCGGCGACGGCGGTGTCGGCGAACCCAAACTCCTCGACGAGCAACTCTACTGGTCAAACGACCGCGTCTAATGGTTCTCTAAACGAGGAGGCTGAAAGATACTGCAGGAATTGTGACATCAGGTTCAGCTCCTTGAAGACGTACAGGGCACATAAGACACATTATTGCAGTACTAGGCACGTGGTGAAAGACACGTCGTTATCGACGCCGACGGCGACGTCGACATCCTCGGTGAAAGCATCGCCGCCGAACAACTCGAGTCCCGATGATTCGCCGCCTCCGCAACCGTGTCTGGCGCTACCTACCAATCCCATTCTTATCGTACCATATTCGTTGTTCCGCGGTGCGAGCGTCCTCGCCGCGCCGACACTTCCGGCTCCTGACACAGCGTGCTTCCTTCTGCCAAACGGTTCCCTTCAGCCAATGACGAGAGGCCTCGCTGCCACGACCCAGAACACGATAGTAGAACCTCCGGCCGTCTTAAGGGCGGCGAACAAACCCTCGACGCCGGCTTCGGTGGTCGTGGCAACGTCCACGTCACCGTCTGCCTCGGCGCCCCTCGATCTCAGTGTGCGCAGATCGCCGGTGCACCAGGACGAGAAGGAAAACAGAATGTCACCAGCGCCATCATCCTTGCCGCCACCTCCAGGCAGTCCCAGATCCAGGGGCAGCGGTAGTCCTAGAACGAGGTCCATCGGCCCGGCGCAAACGGTAGCTGTCGCTCCACCCGCACCCACGGAACTCGCCCTGAGACTCGCCGAGCTGCCACCACCTCCGGTTCCTGGGGTACTCGTCAAGCAGGGCGTCTCCAGGTGCAAAGAATGCAATATCGTGTTCTGTCGACACGAGAATTTTGTCGCTCATAAGAAGCATTACTGCCAAGCAAGGGAGACGACGGTAAGCAACAGTCCACCACCCCCTGGCACACCTTCGCCACCCATCTGCGTCCAGCTCATCTGTGCCGCGTGCGGCATCAAATTCGCTTCCATGGATAATCTGGTTGCTCATCAGGCATTTTATTGTCCTAAGAGGCCCGAACCACAAGAGCATCATACGCGGTGTACTAAGTGCAAGGCGATAATAGAACCTGGCAGTAACCATACCTGCGCTACTGGCACGACTGGTGGTTGGCGATGTCCAGTTTGTGGAGCTGTCAGTCCCACGGCTGGTGCTGCTCAACGTCACATGGATGCCCACCAAGGCGTCAAGGCCTTCCGATGCACGATTTGCCGTTACAAAGGCAATACTCTTCGCGGCATGAGAACCCACATCAGAATGCACTTTGAAAAGCGGGGAACCGATTTACAGGAGGAGAATTACATAACGTGCGTATTGGATGATGAGGCGACGCTTCCGACACCGGAGCCCGCAGCAGCGACGACGCCGGAGGAAAGTCCTGCAGAGATCCAAATGAACGGCAAGACGGAGATACGGAAGAGTCCACAACCACCGCCACCGCCGCCACCACCTCCGCTAGTGCCGGCGATTGCTAATAAGGTGAAGCAAGAACGCGAGGACACGCCACCGCCGGAAGAGAGTTTGGATCCCAGCAAAAGCGGTCCTCGCTACTGTCGCTCCTGCGACATCAGCTTCAACTATCTGAGCACTTTTATCGCTCACAAGAAGTTTTACTGCTCGAGTCACGCCGGCGAGGcgagtaataataataataataataacaataataataatgccaGCGGTCATCCGACACCTCCGCCAACTGGCAGGACCGAAGCATCGGTGTTGTAA
Protein Sequence: MSILLWRQRRAALSLSREDEEWSDSEKTPSVSSGVDGGGSAVSSPIAPPVVEEDSSLPPPPRLNPTSSSTSSSASEDIRLRLSVLSEDTRKRLVSLTEDIEVARSIRGDRHGPSSRNVRTRESSPKDVDEEQQAVKDEECQPRPSSSTAIRRRDSVCRRDSEDSVTAVATEAKRMRLDDEATPRLRLNASLATDPALRPAAVAALTVKPENTSPPNQTPPLPAGLQNAIASGRLFVLPTDGKETITVEPARPPQFALTCPPCGIRFSSPSTLEAHRTFYCAHRPRADEDATNDEDEDGGGGKSGGKFEARKAYACPHCSYSADKKVSLNRHMRMHATSPVPTTIPTSATAVSANPNSSTSNSTGQTTASNGSLNEEAERYCRNCDIRFSSLKTYRAHKTHYCSTRHVVKDTSLSTPTATSTSSVKASPPNNSSPDDSPPPQPCLALPTNPILIVPYSLFRGASVLAAPTLPAPDTACFLLPNGSLQPMTRGLAATTQNTIVEPPAVLRAANKPSTPASVVVATSTSPSASAPLDLSVRRSPVHQDEKENRMSPAPSSLPPPPGSPRSRGSGSPRTRSIGPAQTVAVAPPAPTELALRLAELPPPPVPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARETTVSNSPPPPGTPSPPICVQLICAACGIKFASMDNLVAHQAFYCPKRPEPQEHHTRCTKCKAIIEPGSNHTCATGTTGGWRCPVCGAVSPTAGAAQRHMDAHQGVKAFRCTICRYKGNTLRGMRTHIRMHFEKRGTDLQEENYITCVLDDEATLPTPEPAAATTPEESPAEIQMNGKTEIRKSPQPPPPPPPPPLVPAIANKVKQEREDTPPPEESLDPSKSGPRYCRSCDISFNYLSTFIAHKKFYCSSHAGEASNNNNNNNNNNNASGHPTPPPTGRTEASVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00015644;
90% Identity: iTF_01255115;
80% Identity: -