Basic Information

Insect: Nylanderia fulva
Gene Symbol: -
Assembly: GCA_005281655.1
Location: NW:853504-858921[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.14 11 6.4 4.5 1 23 422 444 422 444 0.98

2 10 0.5 40 4.7 3.6 1 21 450 470 450 473 0.96

3 10 0.00016 0.013 15.6 0.6 2 19 480 497 479 501 0.89

4 10 1.1e-05 0.00089 19.3 4.2 1 23 507 529 507 529 0.98

5 10 0.00097 0.078 13.2 0.1 3 23 537 558 535 558 0.93

6 10 0.13 11 6.5 1.8 1 23 565 588 565 588 0.98

7 10 5.5e-05 0.0044 17.1 1.2 1 23 592 614 592 614 0.97

8 10 0.0011 0.084 13.1 1.4 1 23 620 642 620 642 0.97

9 10 7e-06 0.00056 19.9 1.2 1 23 648 670 648 670 0.97

10 10 8.5e-07 6.8e-05 22.8 2.8 1 23 675 697 675 697 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.14	11	6.4	4.5	1	23	422	444	422	444	0.98
2	10	0.5	40	4.7	3.6	1	21	450	470	450	473	0.96
3	10	0.00016	0.013	15.6	0.6	2	19	480	497	479	501	0.89
4	10	1.1e-05	0.00089	19.3	4.2	1	23	507	529	507	529	0.98
5	10	0.00097	0.078	13.2	0.1	3	23	537	558	535	558	0.93
6	10	0.13	11	6.5	1.8	1	23	565	588	565	588	0.98
7	10	5.5e-05	0.0044	17.1	1.2	1	23	592	614	592	614	0.97
8	10	0.0011	0.084	13.1	1.4	1	23	620	642	620	642	0.97
9	10	7e-06	0.00056	19.9	1.2	1	23	648	670	648	670	0.97
10	10	8.5e-07	6.8e-05	22.8	2.8	1	23	675	697	675	697	0.96

Sequence Information

Coding Sequence: ATGGATGTTGAAGAGGGGGAGGCAAAAATGTGCAGGCTTTGCGGCCAGTATGAGAGAATTTACATCGATGTGTTTGGTGAGGAGGGCGTCAAACGATACCTGGGCCATAAAATCTACAGGAAAATCAACATCCTGATAGATGAGAGGGATCCTCTGCCCAAGGCGATCTGTGTTCAATGTCTGGGCAAGCTCGAATTCGTTTGTGACTTCCAAGAGGAGTGTCTACGCACCCAACAAGTGTTACGCGATCGATACAATCTACCGCCCTTAACAGAGTCTGCGGAAGTAAAGAACGAAGAACCAACTTCCCCGGCGGGTGCGTCGTCGACGGATAATAACAACAGTATTGAAACAAATCTTAATTCCACTAAAGATAGTCGAGCAGAGAAGAGTCAGAGCCAGAGTGATATTAGCGTCGTTGTCATCGTCAAGGACTCAATTGAACAAAAGAAGAGAAACACCGCTTCAAAGACTTTGAGAAGCCTTCGCAgtcagcagcagcaacaacaacaacaacaacaacaaatTTCCAAATACAGCGATGAAACTAATATAGAGAAAAATGTACACAATCAAAATATAACAGAAACATCGCCAATTCGTTGGCTTCGAAGTAGACAAAGCGCGGACTCATCATCGTTGTTCGCGGTGGACAACGAGGAGATTCCGATCGCGAATAGGCTGAGAAGTCACaataatgtagaaaataatatcAACGCTCGTTCGGCCAACGGTAATAGCAACAACGAGAATACGGATAAACAGAGTCCTAAGCAGCAGCAACATTTGCAACAACAGCAAGACTCATCAGCGACGATTCAGTTGCCGACCTCgacattgaataaattattGACCATCGTTTCTAATTCACCCGACATCGAGGTCTCTGTAAAAGAGATGAGAAATCGAAATAACGATGCCGAGGATATCAGTTTTACCGTAGAGTTGTGTCAGAAGCAAAATGACGATGTCGCGACAGTGCGAGCACGAATCTTTCCCGATCAAAGCTATTGTCTCGTCGACACGGCGATCGTGAATCTACTACAGAACGACAACAGCGTGGAGATAAATGGCATTATCAATGGCATCCTCAGTGGCACGTCCACAAAAAACGGCAGTGCAGCGGCGAAGCTGAAAGATCTGGCGGAGTTGGAGCAACAATTGGAGGCGACGCAGAATCCGGAGGAACTCTTCAAGATAGACGGCGAGGAGATTAAAGTGGACGACAACGTGGAGCATGTGGTGAACGGTACGCAGAACGGTTATGCGTGCAAACTCTGCCGTAAGTTTTACGAGCGTCGAGACAAATGCACGGTGCACGTAAAAACGCATCTCGGTATCAAGCAGTATACGTGCGTCGTCTGCAACGCCAAATTTGTTTGCAAATCCGACGTGATGAAGCATATCCGATGCTCGCACACAAATCCCAGACCTATACAATGTCCCAAGTGCCCAAAACGATTTAAATCTAAATTTTATCTAGCCGAACACGACAATGTTCACAAAGGCGTGCGACCGTATAGTTGTACGGATTGCGGACAGAGCTATCATCACAAGGTTTCGTTGCAGATCCACATGAAGTCGCATCTACCCCCGCAGAATCTCGCATGCGAATACTGCGGTAAAGTCTTTCCGTTTCGCACGCGATTACTTGGCCATATTGCTAGCGTTCATATGAAAAAACGACGAAATTTTCGCTGCCGCTTTTGTTATAATCTCTATTCCAGCTTGTCGGTGTTGAATGAACACATCAAAACCCGTCACGCAACCACCTACACGTGCGAGACATGTAGCAAGACCTTTAAAGTTGCTTCCAAGTATAAGGCGCACGTGCTGCAACACTCCAATCCCAAACCGTTTGCATGCCATATCTGCAACAATCGTTACGCGTCCAAGGCATTTCTCAACGAGCACCTGCTCAAACACGAAGGTTTGCGCAAGCACGTGTGTCAGGAATGCGGCGCAAGTTTCGCGCAAGCGAGTCATCTAGCCGCTCATCGTCACGTACACGGCGAGAAGACTCACGCCTGTCCGGAATGTGGCAAAAAGTTTAACCGTCGCGACAATATGAAAGTGCATCGGAAACGGCATTTTGAGGAGAAAAAGACTGCTGCGGCCGGCAAGCAAAAGGGCACCTCCAACGATAACGATTCCGTCGCGTCCACGATCGCattgattaatgaaaaataa
Protein Sequence: MDVEEGEAKMCRLCGQYERIYIDVFGEEGVKRYLGHKIYRKINILIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQQVLRDRYNLPPLTESAEVKNEEPTSPAGASSTDNNNSIETNLNSTKDSRAEKSQSQSDISVVVIVKDSIEQKKRNTASKTLRSLRSQQQQQQQQQQQISKYSDETNIEKNVHNQNITETSPIRWLRSRQSADSSSLFAVDNEEIPIANRLRSHNNVENNINARSANGNSNNENTDKQSPKQQQHLQQQQDSSATIQLPTSTLNKLLTIVSNSPDIEVSVKEMRNRNNDAEDISFTVELCQKQNDDVATVRARIFPDQSYCLVDTAIVNLLQNDNSVEINGIINGILSGTSTKNGSAAAKLKDLAELEQQLEATQNPEELFKIDGEEIKVDDNVEHVVNGTQNGYACKLCRKFYERRDKCTVHVKTHLGIKQYTCVVCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLAEHDNVHKGVRPYSCTDCGQSYHHKVSLQIHMKSHLPPQNLACEYCGKVFPFRTRLLGHIASVHMKKRRNFRCRFCYNLYSSLSVLNEHIKTRHATTYTCETCSKTFKVASKYKAHVLQHSNPKPFACHICNNRYASKAFLNEHLLKHEGLRKHVCQECGASFAQASHLAAHRHVHGEKTHACPECGKKFNRRDNMKVHRKRHFEEKKTAAAGKQKGTSNDNDSVASTIALINEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01523594;
90% Identity: iTF_01255043;
80% Identity: -