Basic Information

Insect: Nylanderia fulva
Gene Symbol: -
Assembly: GCA_005281655.1
Location: NW:164461-171794[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.5 40 4.7 7.4 2 23 337 359 336 359 0.97

2 17 0.032 2.6 8.4 2.2 1 23 411 433 411 433 0.97

3 17 0.023 1.8 8.9 1.5 1 23 482 504 482 504 0.98

4 17 0.025 2 8.8 0.7 1 20 557 576 557 578 0.93

5 17 0.0037 0.3 11.3 2.8 1 23 618 640 618 640 0.98

6 17 0.00011 0.0091 16.1 0.6 1 23 683 705 683 705 0.97

7 17 7.4e-05 0.006 16.7 0.4 1 23 711 733 711 733 0.97

8 17 1.2e-05 0.00095 19.2 1.2 1 23 778 801 778 801 0.96

9 17 0.0017 0.14 12.4 1.7 1 23 807 830 807 830 0.96

10 17 4e-06 0.00032 20.7 1.8 1 23 836 859 836 859 0.98

11 17 0.00013 0.01 16.0 0.0 1 23 867 889 867 889 0.93

12 17 0.043 3.4 8.0 0.2 1 20 950 969 950 969 0.97

13 17 0.00025 0.02 15.0 0.1 2 23 989 1010 988 1010 0.97

14 17 0.00019 0.016 15.4 1.7 1 23 1023 1045 1023 1045 0.97

15 17 0.0013 0.1 12.8 3.1 1 23 1067 1090 1067 1090 0.92

16 17 0.0026 0.21 11.8 1.1 2 23 1157 1179 1156 1179 0.94

17 17 0.00085 0.068 13.4 0.9 1 23 1198 1221 1198 1221 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.5	40	4.7	7.4	2	23	337	359	336	359	0.97
2	17	0.032	2.6	8.4	2.2	1	23	411	433	411	433	0.97
3	17	0.023	1.8	8.9	1.5	1	23	482	504	482	504	0.98
4	17	0.025	2	8.8	0.7	1	20	557	576	557	578	0.93
5	17	0.0037	0.3	11.3	2.8	1	23	618	640	618	640	0.98
6	17	0.00011	0.0091	16.1	0.6	1	23	683	705	683	705	0.97
7	17	7.4e-05	0.006	16.7	0.4	1	23	711	733	711	733	0.97
8	17	1.2e-05	0.00095	19.2	1.2	1	23	778	801	778	801	0.96
9	17	0.0017	0.14	12.4	1.7	1	23	807	830	807	830	0.96
10	17	4e-06	0.00032	20.7	1.8	1	23	836	859	836	859	0.98
11	17	0.00013	0.01	16.0	0.0	1	23	867	889	867	889	0.93
12	17	0.043	3.4	8.0	0.2	1	20	950	969	950	969	0.97
13	17	0.00025	0.02	15.0	0.1	2	23	989	1010	988	1010	0.97
14	17	0.00019	0.016	15.4	1.7	1	23	1023	1045	1023	1045	0.97
15	17	0.0013	0.1	12.8	3.1	1	23	1067	1090	1067	1090	0.92
16	17	0.0026	0.21	11.8	1.1	2	23	1157	1179	1156	1179	0.94
17	17	0.00085	0.068	13.4	0.9	1	23	1198	1221	1198	1221	0.93

Sequence Information

Coding Sequence: ATGGAGGACGAGGACGTGGTGGAGATCGGGAACGTGGAGACGGTCTGCCGGCTGTGCTTGTCCACGGACGGCCCCAGGTCGTCCGTATTCGACCAGAACCGAGAGAAGGAGGAGGATGCGTCCGGGCTGCCACTGGCCGCCAAGATCCAGGCTTGCCTGTCGATCCAGATTTCAGCCACCGACAGGCTGTCCACACTGATATGCACATGTTGCGTAAAGAAAGTTAACCAGTGGCATACTTACAAGGAGTCATGTCTGCGTTCACAGGACACGTTGCAAGAATGGCTGTCAAGCGAGTCTCAACCAAATCCTATGGTCATAACAATCAAGGACGAACCGATGGATATTGATTATGAGGACAATGTAGAAATTATTTCAGAGACTATCAATAACTTTGAACAAGCAGGTTCGTCGCCTCAAATAGTGGAAGACAAGGAGACTGACAAGGAAATACAAGAAGTAATAGATGAAACCGACGCGAATGTCGcacaaaaacaaaaatatttggaGACAATTCCATCTACTGCGGAGACAGATTCATCTACTGCAGAGACAGATCCATCTACTGCAGAGATAATTCCATCTACGGAAACAATTCCAGATCCATCTATTGCAGAGATAATTCCATCTACGGAAACAATTCCATCTACGGAGACAATTCCATCTACAGAGACAGTTCCATCCACCATGGAAATGGAACCTGACAATGATCAAGATGAGATAGATCAAAGTCAAGTAGACAAAGGTCAAGTGGATCAGCAGGCTGCTACACCTCTACGTGCTATTAAAACCGAGCCACCGGACGAGAACGATACCTATTGCACTATCGAACTAAAATCAATGAATAGCAACGAATTGTTATTGAATCCCATGACGGCTGCAGCAAAAGAGGATACGGTTATGGAGGCTGATTCCACGCAAAAATCTAACGCAACTAGTGTGTTGCCCAAGAAGAAGATGAGACGCGGTCCTCACACCCATTTCAGAGGGACACGCGTCTTTAAGAAGAAGTGCACGCATTGCCAGATATTCCTGCATTCCAAATATTCGTACATGAACCACATGAAGAGATTCCACAGCAAGGAGAACGATAGCATTGACAATTTGGAGTTATCGcagaacgacgacgacgaagagaTGGTGGAGGATTTAGAGGACGAGTTAGTCAGCATGGAGAAGGACGCGCCGCTGACGCAGGTCCAGCAGGAAATTATCAGCCAGTTGAAGACATTCTCCTGCTATTCTTGCGAACAGACATTCAACGATCGGCGTAGCACGCTTTCCCACATCCGCCAGCATCTGCCGGATTTGCGACCGTACACGTGCATTGCTTGCTTGACCGAGTTTCCAGATCGGTCCATGTATCAATTACATTGCGGCGCGTCCTTCGAGTGTGCCATGAAGATCGCCCTGGTGATACCCAAGTACGGCAATGAACGGTATTTCACGTGCAACATGTGTCTGCGTTCGATGCGCGATAGGAAGGAGCTGCTGAGTCACTTATCCAAGCATTCCGACAAGCAGTACGAGGAGATGATGTCGCCGGCGCGCGCGCCACCCAAGCTGAAGCCGATGGCACCGTTGCCGTCCGGGAAAGGCAGTCCGGATAAAGCGCAGCAGAAGAACGTCGTCAGCGGGCCTTACAAGAACGGCGATCCGGCGCACAATCACGCTTGCGATCTCTGCGGTATGATCTACAGATACCGAACCAACATGTTCAAGCATCGCGAGTTCTGTCAGAGGCTGCAGTCGGAAGAGAGAGTTTCGTACAAGTGCATACACTGTTCCATGACATTCCTCGTGTTCAAGAAATTCCACACTCACATCACGGTCGATCACAAGAAGAAGGAGTTCACTTGCGTCGAGTGTAACTCGAAGTTCCGATCGCCCAGCGATTACCTGACCCATCATGAGAAACACCGCTCGGCTGTCCTTGCCGGAAATCGTCAGGTGACCCAGGACGACGCGCAGCGGAACGCAGTTCAGGCGCCGTTGAAGGAGCGAAACGTCAAATCGACCGCCAAGTCGAGAATCGGCACTCAGAAGTACAGTTGCGCGCTTTGCACTCAAGAGTTCTCCACGAGGTCGCAGCTGATCGAGCACCGGAATCTTCATCTCAAGGTGAAGATATATTCCTGCGCCATCTGTCACAGCATGTTCAGCAGCCCGGGCACGTTGGAGATCCACATGAAGGATCACGGTATCGAGGATCCGAATGAACGAAACGCCAATATCTCCTGCGTGGAGTACGGCAACCTGGACGAGGACGTGAGGATCGACGAGAAGAACGCGATGAACGCCAGCGCCATCTCGGATCCCGGCACGCAGATTCACGAGTGCTCCGAATGCGGCAAGGTGATGTCGAATTACTCCAATCTTCGCCGGCACACCAAAATCGCTCATCGGAACGCCAAGATCTACGACTGCGTCGAATGCTCGCTCATGTTTACGCGTAAGGAGCTCTATGATCACCATATGCAGATCAAACACAACACGAAGACGACATACCAGTGTCCCCAGTGCCCCAAGCAATTCATCTACCAGTCGAACTTCACCTATCATTTTCGCACCGCCCACCTGGAGAAATCGAAAAACGGTTACGCCTGCGATATTTGTGGCAAGGTTTTCGTTGAAGAGGCGTCGCTGAAGATACACCGAGGCTGGCATAACCGTACCAACTCTCGTCTGAGCACGCGATTCATCCTGGGTAATAAGAAGACGCCCGATAACGAGTCACAGATGGAATCGGCTGGCGTTGAGTCGGCCGAGAATTCGGAACGACCGGCGAGAGCCCGAAAATCCTTCCCTAATCCTCCGCTCCAGACAACGATGGCGTCGAAGAGGAACTTCCAGTGTCAAGTGTGCAACGACCGATTCAACGACGTCACGGAGCTGCGGAACCACCTGTGGGACGTCCATTGCGCCCGCAACAAACCGGAGAAGAGCTTCTCCAACGATGAGCTCCAGTGCGAGCTCTGCACGAACGTCTTCCCCGATCGGGAGACCTTGGCGTCGCACATGCGGTGGCACAAGGCCAACCCGATTCTCAGCGACATACGAAAGACGTACTCCTGCGACGTGTGCAGCAAGTCTTACAGCTCGAAGAAGGTTCTGTGGAAGCACAAGAAGCTTCACAAGCCCACCGTCCAAGCGTCGATCAAGTTCCAATCTTTGGCCAGGAAACCGATGGCCAGCCAATTCCTCTGTACTTTCTGCCGGAAGATCTTCTCCAGCAACCAGTCGCTCCAACGGCACAAACTCAACTTCCACAGTGAGGCGCAGAACCCGCAACGGCAACCGCAGCTACAAATGTACAATAGCGGTCGCAGATTATCCCACGACGACGTCGAGCAGCCCAAGTCGAAACGCATGAAGATGGATACTCCGATTTACGCGGACACTCTAACAATATGTAAGGTGCCGCCCTTCGCCATGGATTTCGCCGGCGAGAGGAGGAAGAAGCCGGTCATGTGTCACGTGTGCAAGAAGGTATTCCCGAGCATGAGCGTGCTGTACAAACACAAGCAGAACGTGCACAAGCGTAAGAACGTGATACCCGAGTGTATACCGATGTCGACTCAGGACGGCAAGTTCTCGTGCAACGTCTGCTACAAGGAGTTCCCCGGCCTGTCGAATCTACGACAGCACTTTACCATCAAGCACAAGAAGACCGCGGAATCCAATCATCAGCCGCCTGCTGCAAGCATCGAGGTActccctcctcctcctccttctcctcctcctcctcctgtCGAACGAGTCGCGAAGGAGGTCCCCGAGCCGGTCCACAACAACGTCCTGTACAGCTGCAAGCTGTGCAAGCAGTGCCACGTCTTCAACAGGGAGGCGATCACGAGCCACATCACCAATGTGCACAACGCGGTCTACCAGGCTGACAGCAGGACGTTCCACAGGGAGGTCAACCTGAGCGGGTACGTCGTGAAGGGGCGGTCGGGGCCACGTGTCCCAGATGTCACGTCAAGTATCCCAACAACCGGGCCCTGA
Protein Sequence: MEDEDVVEIGNVETVCRLCLSTDGPRSSVFDQNREKEEDASGLPLAAKIQACLSIQISATDRLSTLICTCCVKKVNQWHTYKESCLRSQDTLQEWLSSESQPNPMVITIKDEPMDIDYEDNVEIISETINNFEQAGSSPQIVEDKETDKEIQEVIDETDANVAQKQKYLETIPSTAETDSSTAETDPSTAEIIPSTETIPDPSIAEIIPSTETIPSTETIPSTETVPSTMEMEPDNDQDEIDQSQVDKGQVDQQAATPLRAIKTEPPDENDTYCTIELKSMNSNELLLNPMTAAAKEDTVMEADSTQKSNATSVLPKKKMRRGPHTHFRGTRVFKKKCTHCQIFLHSKYSYMNHMKRFHSKENDSIDNLELSQNDDDEEMVEDLEDELVSMEKDAPLTQVQQEIISQLKTFSCYSCEQTFNDRRSTLSHIRQHLPDLRPYTCIACLTEFPDRSMYQLHCGASFECAMKIALVIPKYGNERYFTCNMCLRSMRDRKELLSHLSKHSDKQYEEMMSPARAPPKLKPMAPLPSGKGSPDKAQQKNVVSGPYKNGDPAHNHACDLCGMIYRYRTNMFKHREFCQRLQSEERVSYKCIHCSMTFLVFKKFHTHITVDHKKKEFTCVECNSKFRSPSDYLTHHEKHRSAVLAGNRQVTQDDAQRNAVQAPLKERNVKSTAKSRIGTQKYSCALCTQEFSTRSQLIEHRNLHLKVKIYSCAICHSMFSSPGTLEIHMKDHGIEDPNERNANISCVEYGNLDEDVRIDEKNAMNASAISDPGTQIHECSECGKVMSNYSNLRRHTKIAHRNAKIYDCVECSLMFTRKELYDHHMQIKHNTKTTYQCPQCPKQFIYQSNFTYHFRTAHLEKSKNGYACDICGKVFVEEASLKIHRGWHNRTNSRLSTRFILGNKKTPDNESQMESAGVESAENSERPARARKSFPNPPLQTTMASKRNFQCQVCNDRFNDVTELRNHLWDVHCARNKPEKSFSNDELQCELCTNVFPDRETLASHMRWHKANPILSDIRKTYSCDVCSKSYSSKKVLWKHKKLHKPTVQASIKFQSLARKPMASQFLCTFCRKIFSSNQSLQRHKLNFHSEAQNPQRQPQLQMYNSGRRLSHDDVEQPKSKRMKMDTPIYADTLTICKVPPFAMDFAGERRKKPVMCHVCKKVFPSMSVLYKHKQNVHKRKNVIPECIPMSTQDGKFSCNVCYKEFPGLSNLRQHFTIKHKKTAESNHQPPAASIEVLPPPPPSPPPPPVERVAKEVPEPVHNNVLYSCKLCKQCHVFNREAITSHITNVHNAVYQADSRTFHREVNLSGYVVKGRSGPRVPDVTSSIPTTGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -