Nful004845.1
Basic Information
- Insect
- Nylanderia fulva
- Gene Symbol
- -
- Assembly
- GCA_005281655.1
- Location
- NW:2592-19747[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.3e-06 0.00019 21.4 1.4 1 23 32 54 32 54 0.96 2 14 0.00024 0.019 15.1 4.1 1 23 60 82 60 82 0.97 3 14 4.9e-06 0.0004 20.4 1.2 3 23 90 111 88 111 0.95 4 14 0.00034 0.027 14.6 1.7 5 21 120 136 117 137 0.93 5 14 0.00052 0.042 14.0 1.7 3 23 227 248 225 248 0.93 6 14 9e-05 0.0072 16.4 1.3 1 23 254 277 254 277 0.96 7 14 0.31 25 5.3 0.4 7 23 289 305 283 305 0.91 8 14 0.00012 0.01 16.0 4.0 1 23 311 333 311 333 0.96 9 14 0.00044 0.036 14.3 5.8 1 23 339 361 339 361 0.96 10 14 0.0016 0.13 12.5 3.2 3 23 375 395 374 395 0.97 11 14 4.4e-05 0.0035 17.4 5.1 1 23 401 424 401 424 0.97 12 14 2.4e-06 0.00019 21.4 0.5 1 23 429 451 429 451 0.97 13 14 7e-06 0.00056 19.9 1.7 1 23 457 479 457 479 0.98 14 14 0.34 28 5.2 2.7 1 11 485 495 485 497 0.92
Sequence Information
- Coding Sequence
- ATGCGTGTCTTGACGAAAATGTTTTGCCCCTTCGCGGGCAAAACTACCATGAAAGACCATCGGCGTACCGGTATAGATATCGGTGAACGCTCTTACTTGTGTGACGTCTGCAACAAGTCATACCGCTCTAAAAAGGAATTGAAATTACACATCATGAAACATACAGGCGATTTTCCGCACAAATGCGTTTATTGCGACAAGGGATTTACACGTAAACGGGATATGCTGTATCACTTGACGAAGCATACGAatgaaagaaatcaaatatgcGATGTATGTGGTAAGTGCTTCGCCCGAAAGGACATGTTATACAACCACAAAAAAATTGTACACTCCATGGAAAAACCGTATACATGTAAATGTGGCAAGAGTTACAAGCGTAAAAATGATCTCAAAAAGCACAAACGCTTAAAATTAGGGATGTGTGAAAAATCGCGAGAATTAAGTTCAGTCGGACCAGATCCGAATTTAATTCCagaaaatttaaacaaaaatagaaacaaCAGAGATTACATTTCTGCTGAACAAGTGGGCACAAGTAATGTCACGAAAAAGACTAATGACATAGCGAGAAAGTGCCAAGGTGCCAAGATGAACGAATCTAATGTGTGTCTTGAAGAGAATGTTAAACAATCTAAAGCGAAAAGGGTTGCACTCATCGATGATACAGATATGATTTGCCAGTTCtgtaataaaacatttactTATCAGAAAAGCTACCTTACTCACCTTGTACGCCAACACGAAGATAAGACAGAGTACAAGTGCTATCCCTGCTTTAAGGTATTCCGTACACTTGATAGTCTGATTCGTCATCAAAAGAACATCCACTATGTTAAGAAAGATCACCCTTGCGACATATATGACAAAAACTTCAAGAGCAAAACCACCATAGAAGACCATCGGCGTATCCATACCAGTGAACTTCCTTACTTGTGTAAAATATGCGACAAGTCGTTCAGCTGCACAAAGAACTTGAAGGAACATATCAAAAGTCATACAGACGATTTCCCGCACAAGTGCGACTATTGCGGCAAGGGATTTAAAAGTAAACAGGATATGCTGCATCACTCGACGAAACACACAAGCGAGAGGAAGCAGATAGATGATACAGATAGAATTTGCAAGctctgtaataaaaaatttttttcgcgaaaaagTTATCGTGATCATGAACGCTATCACGAAAATGAGACAACGTACAAGTGCCGTCTCTGTTCTAAGAAATTCAGTACGCTTTGTAATCTGGTTCGTCATCGAAGGAACATCCACAACCCTAAGAAGCATCCTTGCAACATATGTGACAAAAGTTTTGCGGAAAAGTCCGCTATGGAAGATCATCGGCGTATCCATATCGGTGAACGGCCGTACATGTGTGATACTTGTAACAAAGCATTCACATCCAAAACGAGATTATATAATCACATTAAGATTCATATAGGCAATTTCCCGCATAAATGCGCTTATTGCGGCaagaatttttgtataaatctaGTATGA
- Protein Sequence
- MRVLTKMFCPFAGKTTMKDHRRTGIDIGERSYLCDVCNKSYRSKKELKLHIMKHTGDFPHKCVYCDKGFTRKRDMLYHLTKHTNERNQICDVCGKCFARKDMLYNHKKIVHSMEKPYTCKCGKSYKRKNDLKKHKRLKLGMCEKSRELSSVGPDPNLIPENLNKNRNNRDYISAEQVGTSNVTKKTNDIARKCQGAKMNESNVCLEENVKQSKAKRVALIDDTDMICQFCNKTFTYQKSYLTHLVRQHEDKTEYKCYPCFKVFRTLDSLIRHQKNIHYVKKDHPCDIYDKNFKSKTTIEDHRRIHTSELPYLCKICDKSFSCTKNLKEHIKSHTDDFPHKCDYCGKGFKSKQDMLHHSTKHTSERKQIDDTDRICKLCNKKFFSRKSYRDHERYHENETTYKCRLCSKKFSTLCNLVRHRRNIHNPKKHPCNICDKSFAEKSAMEDHRRIHIGERPYMCDTCNKAFTSKTRLYNHIKIHIGNFPHKCAYCGKNFCINLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01077719;
- 90% Identity
- -
- 80% Identity
- -