Nful005158.1
Basic Information
- Insect
- Nylanderia fulva
- Gene Symbol
- -
- Assembly
- GCA_005281655.1
- Location
- NW:3646-20046[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00016 0.013 15.6 3.3 3 23 89 109 88 109 0.97 2 16 0.0002 0.016 15.3 8.2 1 23 115 138 115 138 0.97 3 16 3e-06 0.00024 21.1 1.2 1 23 144 166 144 166 0.98 4 16 1.6e-06 0.00013 22.0 2.3 1 23 172 194 172 194 0.98 5 16 0.00032 0.026 14.7 2.0 1 23 226 249 226 249 0.96 6 16 4.7e-05 0.0038 17.3 1.2 1 23 255 277 255 277 0.98 7 16 0.00053 0.042 14.0 2.0 1 23 283 305 283 305 0.96 8 16 0.0069 0.55 10.5 0.9 1 23 311 333 311 333 0.95 9 16 0.00084 0.067 13.4 0.1 2 23 340 362 339 362 0.95 10 16 0.22 18 5.8 0.3 7 21 373 387 368 388 0.89 11 16 8.3e-05 0.0067 16.5 1.1 3 23 474 494 473 494 0.95 12 16 0.2 16 5.9 0.4 8 23 507 523 501 523 0.93 13 16 1.3e-05 0.001 19.1 2.1 1 23 529 551 529 551 0.97 14 16 0.0049 0.39 11.0 3.2 1 23 557 579 557 579 0.98 15 16 8.5e-06 0.00068 19.7 4.4 1 23 613 636 613 636 0.96 16 16 0.0022 0.18 12.1 0.6 5 21 645 661 642 662 0.92
Sequence Information
- Coding Sequence
- ATGCGTGTCGTAACGAAAATGTTTTACCGCTTCGCGGGCAAAATCACCACGGATGAATCAAGTGGTAAGCagaaaaacaaaaatagaaagaacaaaaactGTATTACTATTAGAAAGATGCCCGCAACAAGTTGCAAGAAAAAAACGTTAAACATCCCGAAGAGGTGCACTACCAAGGTGAACGAATCTAATGCGTGTCTGGAAGAAAATGTTAAACAATCCAAAGCCAAAAGAGTTGCACCTATCAATGATATAAACAGGATATGCAAGCTctgtaataaaacattttctttaCAACAGAGCTATCATGCTCATATGCGCCAACACGCAGATAAGACACAGTACAAGTGTCATTCCTGTTCTAAGAAATTCAGGACGTTTCATAATCTGATTCGTCATCGAAAGAACATCCACTACGACCTAAAAGATTACTTTTGCGACATATGCGACAAAAAATTCGTGGACAAGACCGCCATGAAGAACCATCGGCGTATCCATACTGGTGAACGCCCTTACATATGTAACATATGTAACAGGTCATTCCGTTTTAGACAGAACTTAAAATTACACGTTAAAACTCATACAAACGATCCCTCACGCGAATGCGTCAATCGCCGCAAGGGAGCGTTTCACATTAAACGTGCTCTTATACGCTGGCACGAAAATCAGGCAGAATACAACTGCCATCTCTGCCTTAAGGATTTCGGTACGCTTAGTAGTCTAATTCGTCATCGAAAGAACATCCACTACGACCTAAAAGATTACTTTTGCGACATATGTCACAAAAGCTTCGCTGGTAAAACCGCCATGGAAGACCATCGGCGTATCCATATTGGTGAACGCCCTTACTTATGTGACATGTGCGGCAAGTTGTTCAGATGCAAAACCAACTTGAGGATACACATTCAGATTCATATAGGCGATCTCCCGTACAGGTGCGTCTTTTGCGACAAAGGATTTATAAGTAAACGGGATGTGCTATTACATTCGACAAAACACACGAGAGAGAGGAATCAAATGTGCGATGTATGTGGCGCGCGCTTTGCCCGAGAGGACGTGTTAAAGCAGCACAAAAAAATAGTGCACTCCGAGGAAAGACCGTATATATGTAAATACGGCAAGAGTTATAAGCGTAAATGTGATCTCAAAAATCACAAATGCTCAAACTTAGGGATTAGAAAATCGCGAGAAATTCCAGTCGGGCCTAATTCGAATTTAATTCCacaaaatttaaacaaaaatagaaacaaCAAAGATTACATTCCTACTAAACAGACGCGCGCAAGTAGTTGCATGAAAAAGACTAATGACATAGCGACAAAATGCCAAGGTGCCAAAGTGAACGAATCTAATGCGTGCTTTGAAGAGAATGTTAAACAGTCCAAAGACAAAAGGTTGCCCATCAATACAGACAGGATTTGCAAGCCctgtaataaaacattttcctCTCAGCAAAGCTACCGTGCTCATATACGCCAACACAAAGACAAGACACAGTATAAGTGTCGTCCCTCCTCTAAGGAATTCAATACGCTTGATAGTTTGATTCATCATCAAAAGAACATCCACTACGCCAAGAAGGATCATTCTTGCGACATATGTGACAAAAAATTCAGGGATAAGTTCGCCATGGAGGACCATCGGCGTATTCATACCGGTGAATGGCTGTACGTGTGTGACATTTGTAACAGAGCACACATTTCTAAGCATGACTTGTATCGTCACGTCAAACGTCATACAGATGACCTCCGGCACAAGCGCGTCTATAATGGGAAGAAATGTTTGAATAAATCTCGTATGGTGGAACATTTATCGGTGCACAAGAGCGCGAAAAATCACATATGCGACCAATGCGACAAGCATTTTATCCGCAAGAATACGTTAATCAGACATCAGAAAACTGTGCACTCCGAGGTAAAACCGTATAAGTGTCAATGCGGCAAGAGTTACAAGCGTGAATATGATCTCAAACTTCACAAACGCATAGGAGCGTGTACAGGCCCAGCTTTAAAGATGTGGAGGCCCTGGATCGACGAAGAGATGGAGACCTAA
- Protein Sequence
- MRVVTKMFYRFAGKITTDESSGKQKNKNRKNKNCITIRKMPATSCKKKTLNIPKRCTTKVNESNACLEENVKQSKAKRVAPINDINRICKLCNKTFSLQQSYHAHMRQHADKTQYKCHSCSKKFRTFHNLIRHRKNIHYDLKDYFCDICDKKFVDKTAMKNHRRIHTGERPYICNICNRSFRFRQNLKLHVKTHTNDPSRECVNRRKGAFHIKRALIRWHENQAEYNCHLCLKDFGTLSSLIRHRKNIHYDLKDYFCDICHKSFAGKTAMEDHRRIHIGERPYLCDMCGKLFRCKTNLRIHIQIHIGDLPYRCVFCDKGFISKRDVLLHSTKHTRERNQMCDVCGARFAREDVLKQHKKIVHSEERPYICKYGKSYKRKCDLKNHKCSNLGIRKSREIPVGPNSNLIPQNLNKNRNNKDYIPTKQTRASSCMKKTNDIATKCQGAKVNESNACFEENVKQSKDKRLPINTDRICKPCNKTFSSQQSYRAHIRQHKDKTQYKCRPSSKEFNTLDSLIHHQKNIHYAKKDHSCDICDKKFRDKFAMEDHRRIHTGEWLYVCDICNRAHISKHDLYRHVKRHTDDLRHKRVYNGKKCLNKSRMVEHLSVHKSAKNHICDQCDKHFIRKNTLIRHQKTVHSEVKPYKCQCGKSYKREYDLKLHKRIGACTGPALKMWRPWIDEEMET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -