Basic Information

Insect: Nylanderia fulva
Gene Symbol: -
Assembly: GCA_005281655.1
Location: NW:21384-26024[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0002 0.016 15.3 0.8 2 23 128 149 127 149 0.96

2 11 0.0023 0.18 12.0 5.2 2 23 218 239 217 239 0.95

3 11 3.9e-05 0.0031 17.6 2.5 1 23 375 397 375 397 0.98

4 11 6.5e-07 5.2e-05 23.2 0.6 1 23 403 425 403 425 0.98

5 11 4.3e-08 3.4e-06 26.9 0.3 1 23 431 453 431 453 0.99

6 11 5.3e-05 0.0042 17.2 1.0 1 23 466 488 466 488 0.98

7 11 2.3e-07 1.9e-05 24.6 3.1 2 23 495 516 494 516 0.98

8 11 1.3e-07 1.1e-05 25.3 1.6 1 23 522 544 522 544 0.98

9 11 0.0028 0.23 11.7 1.5 1 23 550 571 550 571 0.94

10 11 4.5e-05 0.0036 17.4 5.2 1 23 577 599 577 599 0.97

11 11 1.2e-06 9.8e-05 22.3 3.9 1 23 605 627 605 627 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0002	0.016	15.3	0.8	2	23	128	149	127	149	0.96
2	11	0.0023	0.18	12.0	5.2	2	23	218	239	217	239	0.95
3	11	3.9e-05	0.0031	17.6	2.5	1	23	375	397	375	397	0.98
4	11	6.5e-07	5.2e-05	23.2	0.6	1	23	403	425	403	425	0.98
5	11	4.3e-08	3.4e-06	26.9	0.3	1	23	431	453	431	453	0.99
6	11	5.3e-05	0.0042	17.2	1.0	1	23	466	488	466	488	0.98
7	11	2.3e-07	1.9e-05	24.6	3.1	2	23	495	516	494	516	0.98
8	11	1.3e-07	1.1e-05	25.3	1.6	1	23	522	544	522	544	0.98
9	11	0.0028	0.23	11.7	1.5	1	23	550	571	550	571	0.94
10	11	4.5e-05	0.0036	17.4	5.2	1	23	577	599	577	599	0.97
11	11	1.2e-06	9.8e-05	22.3	3.9	1	23	605	627	605	627	0.99

Sequence Information

Coding Sequence: ATGTTTATAGTGACGAAAGAAATCGACAGTGAGAATATAAGTAAACTGTGTCGCACATGTTTGAGAGAAGACGGCGACAAAATGATATGCTTATTCGTAGGTCCGGCTGGTTCGTCGCTCGCCGCTAAATTACGATCGCTTTCTTGCTTAGAGGTCTGGCAAGGAGATGGTTTGCCTGAGAAGATGTGCGATCGTTGCGTCACCAGAGCAGAGTCGGCTCTTTTATACAGAGAGCAGTGTCGTGCAGCAGACAGGGCTTTGCGACAAGCAGCATTGAAGGTATCTGGATTAACGTCGTACACCACTATTTCTGGTTGCAAACTGTATCAAAATCAACAAACTCAAGGATTTATACCTGTGCAAAATTCTCACAAGACACTAAAGTGTATGGAATGTGGTGCTGTGTTTACCAATTATCAAGAACTCTGTGCACACAATCGACTGCATTTACCCTTTATACAAGATAACATACCTATGCAGCATATGCACATTGTAGAATCTCAAAATTCGTATCTCAATTTTACCCATGTCGGTACAAATTTTatcaatgataataatataaatatgcaatTATCTCCATCAGTTAGATCAAATATGATGCATGCTATGTCGTTGAATGAACAAAACTCGAGTCGTGCTGCTTGTGCCTTGCATTGTTCCTTGTGCAATCATACATTCACTAATAGGAAACAATTAATAACTCATAATATAACGCATAGTACGGAGCGTGTCAATATATCGTGCGATAATGAAAATATAGAGATATGCGAAAATTCTAATCCCATTCCGCAAAATTTAAGTTATGAAAGATCTGTTCATTCCgttgataatcatattcaaaatCTATCATATCAAAGATCTACTATGGATGATAATGATGGAATGCAAAATCTAAACTTTCCAGAAAACATCGATCTGGATGGCGCAGAGAATAGTTCGGAACGTGTACAAAATATAACAATACACTCTGAAAATAACGTTCAATCAATTACAGAAGGTTTAAGATTTATAAAGGCATCTGAAAAAGATAAGCAACTCATAATCGAGTATCACGGATGTTCAATTGATAATAGTTATAAACAATCTGACATAAAAAATACGGAAGATGGTCACGCGAAGAAGCACCAGTGCGAACtatgtttaaaacaattttcaCAAAAATCTAAATTACTCGCTCATCAATTGTCTCACTCTGGCCAACAACCGTTCAAGTGTCTAAGCTGTGGCAAAGCTTATGCATCAAAAAGCAAACTCAATGCGCACATGAGATTACACACAAAAACCAATGTGTATCAATGTAAGATAtgcgataaaatattttcatatccGTCGTACTTAGAGGAacacataaaaatacataataaaggTGGCAGCAATAGACCACAGAGCAAGGAATTTGAATGTAGCGTTTGTAATAAACGTTTCCAACTCTTGAAGAATTTGAAAGCTCACGAAAGACTTCACACCGGAAAAGGTTTAATGCAATGTGAgatttgtgataaaaaatttagtcataattataatttaaaaatgcatCTACAAACACATAAGACAATGAAAGTACACAAGTGCGAATACTGTGACAAACGTTTTGTACAGAAAGGTAATTTAGTGGAACATTTACGGATCCATACTAAAATAAAGCCGTTCGTGTGTAAATTATGTGGCAAATTTGCGCAATCAAGTCATCTTAAAAGTCATGAAGCTTCGCACGGCGTTTTGCGACAGCATCAATGTCGATTATGCGGAAAGAGGTTCAAATTAGCTAATCACTTGAAACGAcatttaaatttacatattggTCCAAAGATGTATAAATGCAATCAATGTAATCAAATGTTTTCACAATCTTTTAGTCTAACAAGACATTTAAAAAGGCACAATGAATCACATACGTAA
Protein Sequence: MFIVTKEIDSENISKLCRTCLREDGDKMICLFVGPAGSSLAAKLRSLSCLEVWQGDGLPEKMCDRCVTRAESALLYREQCRAADRALRQAALKVSGLTSYTTISGCKLYQNQQTQGFIPVQNSHKTLKCMECGAVFTNYQELCAHNRLHLPFIQDNIPMQHMHIVESQNSYLNFTHVGTNFINDNNINMQLSPSVRSNMMHAMSLNEQNSSRAACALHCSLCNHTFTNRKQLITHNITHSTERVNISCDNENIEICENSNPIPQNLSYERSVHSVDNHIQNLSYQRSTMDDNDGMQNLNFPENIDLDGAENSSERVQNITIHSENNVQSITEGLRFIKASEKDKQLIIEYHGCSIDNSYKQSDIKNTEDGHAKKHQCELCLKQFSQKSKLLAHQLSHSGQQPFKCLSCGKAYASKSKLNAHMRLHTKTNVYQCKICDKIFSYPSYLEEHIKIHNKGGSNRPQSKEFECSVCNKRFQLLKNLKAHERLHTGKGLMQCEICDKKFSHNYNLKMHLQTHKTMKVHKCEYCDKRFVQKGNLVEHLRIHTKIKPFVCKLCGKFAQSSHLKSHEASHGVLRQHQCRLCGKRFKLANHLKRHLNLHIGPKMYKCNQCNQMFSQSFSLTRHLKRHNESHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016013;
90% Identity: iTF_01254982;
80% Identity: -