Nful013021.1
Basic Information
- Insect
- Nylanderia fulva
- Gene Symbol
- -
- Assembly
- GCA_005281655.1
- Location
- NW:28368-97286[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 42 0.0077 0.62 10.4 0.2 2 23 501 523 500 523 0.91 2 42 0.8 64 4.0 0.3 1 23 535 558 535 558 0.95 3 42 0.1 8.3 6.8 6.5 1 23 571 594 571 594 0.94 4 42 0.00012 0.0096 16.1 4.9 1 23 600 622 600 623 0.95 5 42 0.55 45 4.5 0.6 2 23 629 651 628 651 0.93 6 42 0.0016 0.13 12.5 1.5 1 23 656 679 656 679 0.98 7 42 1.4e-06 0.00011 22.2 0.5 2 23 686 707 685 707 0.96 8 42 1.4e-05 0.0011 19.0 1.7 1 23 713 735 713 735 0.97 9 42 7.8e-05 0.0062 16.6 1.0 1 23 741 763 741 763 0.98 10 42 2 1.6e+02 2.8 5.1 2 23 876 897 875 897 0.96 11 42 0.00021 0.017 15.3 2.5 1 23 899 921 899 922 0.95 12 42 0.006 0.48 10.7 1.6 1 23 927 950 927 950 0.97 13 42 0.00013 0.01 15.9 1.5 1 23 956 979 956 979 0.95 14 42 0.0027 0.21 11.8 1.9 2 23 986 1008 985 1008 0.95 15 42 0.0037 0.3 11.4 0.2 1 23 1013 1035 1013 1035 0.97 16 42 2.1e-05 0.0017 18.4 1.2 3 23 1043 1062 1042 1062 0.98 17 42 1.4e-05 0.0011 19.0 0.1 1 23 1068 1090 1068 1090 0.97 18 42 0.0021 0.17 12.1 0.4 1 23 1096 1118 1096 1118 0.97 19 42 0.00013 0.01 16.0 1.3 2 23 1218 1239 1217 1239 0.95 20 42 0.0095 0.76 10.1 3.8 1 23 1241 1264 1241 1264 0.97 21 42 0.075 6 7.3 3.5 1 23 1269 1292 1269 1292 0.95 22 42 7.9e-05 0.0063 16.6 1.9 1 23 1298 1321 1298 1321 0.96 23 42 0.01 0.81 10.0 1.0 3 23 1329 1350 1327 1350 0.95 24 42 0.00037 0.03 14.5 0.2 1 23 1355 1377 1355 1377 0.97 25 42 1.8e-05 0.0015 18.6 0.1 3 23 1385 1405 1383 1405 0.97 26 42 9.7e-06 0.00078 19.5 0.1 1 23 1411 1433 1411 1433 0.98 27 42 0.0012 0.097 12.9 0.8 1 23 1439 1461 1439 1461 0.97 28 42 0.033 2.6 8.4 6.0 1 23 1496 1519 1496 1519 0.96 29 42 3.4e-05 0.0027 17.8 0.5 1 23 1525 1547 1525 1547 0.97 30 42 0.00033 0.026 14.7 3.2 1 23 1553 1575 1553 1575 0.98 31 42 0.0005 0.04 14.1 3.6 1 23 1581 1603 1581 1603 0.98 32 42 0.00099 0.08 13.2 3.3 1 23 1645 1668 1645 1668 0.95 33 42 0.76 61 4.1 1.0 3 23 1680 1700 1678 1700 0.95 34 42 1.4e-06 0.00011 22.1 1.3 1 23 1706 1728 1706 1728 0.98 35 42 2.5e-06 0.0002 21.3 1.1 1 23 1734 1756 1734 1756 0.97 36 42 1.6e-08 1.3e-06 28.2 0.4 1 23 1762 1784 1762 1784 0.99 37 42 0.65 52 4.3 0.7 2 23 1817 1839 1816 1839 0.96 38 42 0.00011 0.0091 16.1 0.8 1 23 1845 1868 1845 1868 0.97 39 42 0.05 4 7.8 0.6 2 23 1874 1895 1873 1896 0.94 40 42 0.00014 0.011 15.9 0.7 1 23 1901 1923 1901 1923 0.98 41 42 1.1 86 3.6 0.4 2 23 1930 1952 1929 1952 0.94 42 42 4.4e-05 0.0036 17.4 2.8 1 23 1973 1996 1973 1996 0.96
Sequence Information
- Coding Sequence
- ATGTCCTCCCTCGACTATCTGGACCTGTGTCGGCTGTGTCTCGTGAAGGATCGCGTCTCTATGCCGATCTTCGAAGGCGAGGGCGACATACGGCAGATCTTTCTCAAGATCACCGCTTGTTTGCCGGTCAAGgTTGCCAGAgaagacaaattacctaaaaAGATATGTGACGAGTGTGTATATAAACTAGAATTAACTTATCAATTTTGGCATACGACAGCAAACGCAGAGAAACAGTTACTACAATGGCTAGGCGAGGTAAACATGGAAGACAAACAGGGTTACGTTGGCAACGTTCTCAATCCAaacggAATGAAGCCAGATCAAAACAACGAGAACAGGTTAGATGGTACTGTGATGCAACAAGTAAGCGAACATCAGAACAATATGACTATGGGTATGATGGACAATATGGGTTTGACTATGCCTATGATGATGTCAAGCAGTACCCAACAACAAATAACCTCAGTTCCTATAGACAACAGTGGTAGCTCTGTACAAAATGTCCAACCAGTAGCTGGACCAAGTACACAAGCGACACATGACCAAATTACACAGAATCAAACAAATACATCCACGCagcaagaagaagaagaggaaagtAGTGAAGAAGATGAAAACTCGGATGATGAATGCGATGGAGATGAAGGCCTACCTATAAAAGAAGAAAGTGAAGAAGACCCTAATAATAGTAGAACTATCGAGCCTACAACATTTGTTAACGTCTCTCTGGCATGCGACGAGGCGGGTCCATCTGGACTTCAACAACAAAAAATTGCTGATATGCCCGAGATGGTAATGTCACAGACAACAGACGTGGATCCAAAAACTGGGTACGAAGCAGGCGCTTGCGATTCTCGCGGTATTTTTGTATTTGACAATGAATCGTTGGTGATGAAGAAATGGCAAATTTTGGAGTTCGATGGCAAGCCATATTACGCGTTTATACCTGAAGACGATGCGCCTCTGCCGGATGAAGATATACCGGAATACGAAGATGTAGAAACCGAAGaaatagaagaagaagaagaagtcgAGCAAATAGAGGAAGAAGACGAGCAAATAGAGGAAGAAGACGAGCAAATGGAGGATGAAGAACAAAACAGTGCGGATGATATGAAACAGGAGTTTTATTTCGAGGAAAAGGGCTTTGATTCTATggatgaaaaattatataacgacGACAGCATTCTTAACGGGGACGTCGAGGAAACGGCAGAAGCAGATGCAAAACCGATCACGTTGAACGGCGACGCTGTGGACGACAAATCTGGTGGAGATTTATACCAAGTCAAAGTACAGGGAAGTACAGTCATCATCGAGAAACTGACATCAGCAGAGATGGAGGCAAAAGCAGAGTATCAGGAAGCGGAGGAAGCATATAATAACGATGAGGGAGAGATAGAATATCTGGAGGAAGAAATTCTTGATTCTCCTTTAAGCGCTAATAATCCATCCTTGCCTACGAAAACATCTTTGAAGAGTCCTGGCGGGGCTCTCAAGTGCAAAGTATGTTCGGAAATGTTTGACTCGGCGATATCCTTCCGGAAACACGTGGCGTGGACTCATAAAAAGAAGGTGTGTATAAAAGAGGACGGTGCGTATATATGCGCCGTGTGCGACTACAGGACCTTGAAGAAAAGCTTGTTTGCCGCGCATCTGGAGAGGAAGCATGAGACCTGGTCCAGGAAGCGATCCAGTAACACGGTATTCCCTTGCCACGCCTGCGGATTCGTTTGTAGATCGAAGCATTCCCTGCAATCCCACTTCATAAGGAAGCATACGGACAAGTTCGAGCACCAGTGCAATTCTTGTCCCAAGAAATTCAAGGTCAAGGGAGACCTAACGAATCACATACGGTTCCATCACAAGGAGAAGCCGATCAAGTGCGATATATGTGACAAGCTGTGCTTGAACACCGGCTCGTTGTACGTGCATCAAAAATGGGCGCATTTCAAACCGAAATACGAATGTCACATCTGCAAAAGACGCATGGTTACGCAGGAAAATCTGGATCAACACTTACTGACGCAGCACGAAAAACGTGATAAGATAGTCTGCGCCGAGTGTGGCAAGACGTTCACGAAGAAGGACTCTTTCAAGAGGCATATGGTAGTTCATACGGGATGTAAACCGCATTCCTGTATGATCTGTAAGAAACCCTTCGCCAGAAGATCGCAGCTGCGCCAGCATTTGCTAATTCACACTGGCAAGCGACCATTTGTGTGCGACATTTGTGGAAAAGCGTTCACGCAAAAGCCAGGCTTGATCTGTCATAGAAAGACTCATCCTGGTCCTCATCCACCATTGCCGGTTATGCCGATCGCGGACCTCGTTAATGAATTTACAAAAGAATACGTGCAGGAAAACGAATTCACAAAAGAATTCGTGCAAGAAATTGAGGAGAGAATTGACGAAGAAGTAATGGCTGATCCATTAAACATTGAATCCATTATCACCCAAAAACTATTGGAATGCGAACAAACGAAAAGAGAAGAGTCTTCAATAATAGACGAAGAACGAACGCTAGAAGGGATGAACGTAGACTTGGAGACGAGAAAACCTAGTCCGCGAATTGTAACCGAAGGGAATCGATCGGTCAGAAGGAAGCCGACGTACCATCTAGAATGCGATCACTGCTGCCGCAAATTCCTGAAGAAAAGCAATCTCGCCGAGCACTTGAAGCAGCACAGACACCAGTGCGCCGATTGTCCGAAGAGCTTCAGCCTTCGGCGTTACTTGGTCTCTCACATAGCGAGGCATCATCATCAGGAGATGTACGAGTGCAGCGTGTGCAAATTCAAGAGCAATAACAAGGGCACTCTGAAGAACCACTACATCCGATTGCACACGAGCGACTACGATTACGCGTGCGACATTTGCGGCAAGCAATTCAAGATCAAGAAAGCCCTGAATCACCACGTGAAGCAGAATCACAGCGAAGCACCGCCGATCGTGTGCGACGTCTGCGGTCACTTCAGCAAGAACCTCCACGCCCTTAGAGCCCATATGAAGTACAGACACTACAAGCCGGAATTTGTCTGCCGGATATGTCGACGAGGTATGACCACGCAAGAGAACCTGGAGCAGCATCTCATGTGGCACGAAACCAGGGAGAAGGTGCTCTGTCCGACCTGCGGCAAGAGATTCCGAAGACGCGATCTTAACTCGCACATGAGGGTGCACACCGGAGTAAAGCCGTTTCCTTGTCCTGTCTGTGGGAAGACGTTTCGACGACAAACAGCGCAGGAGCAACATGTGTTGATCCACACCGGGAAGAGACCCTATATTTGCGATATTTGTGGCCAAGCGTTTGCCCAAAAACCTGGTCTCATCTGCCACAGGAAGAGACATCCTGGTCCCCTGCCTCCGCTACCTGTAGTCTCCGTTAAAAAAATTGTCACGGAATTTACGAAAGACGATTCACGCATGGACCCCCTGAACGTCGTGGACGTCAATAATTCGGAATACTCTCCCGTGGAAAGCATAGAGTGCACACCCGAGTATGATTCGCTTCCAAATAGGCTTCAACGACACATTACCAGAAAGAGAAAAGTGTCAAAACAAGAAAATTATTGTACGAAGAAAGATACGAAAAAGCAAAATACAAATCAGATCAAAGTCGAGAAGAGGAAACCCGAACTCTTCCTGGAATGCGCCACATGCGGCAAACGTTTCAGCGACAAACCCACCATGATAAAACACATGAGCCACCACAAGTACCAGTGCCAAACCTGTTGCCAGAGTTTTAGCCTGAAGCGAGATCTGAAGCGCCACATCGAGAAGGTCCACGGACCTCTGCTCTATCCCTGCAGCATTTGCGAGTACAAGAGCAGCAACAAATGCACCCTAAAGGATCACTTCATACGAAAGCACACCAGCCTCTTCCAGTATTCCTGCACGGTTTGTAAGAAGCAGTTCAAGATCAAGAACGATCTGAAGCAACATATGAATCAAGTACACAGTGGCGAACCACCCGTCATTTGTAACATCTGCGGACACGCGTGTAAGAACCTGCCTGCTATCAAGGCGCATATGAAGTATCGGCACTACAAGCCGGCTTACGAGTGCAAGATATGCAAACGCGGTCTGACCACGCAAGAGAATCTGGACCAGCATCTAATCTGGCACGAACGGAAGGAGAAGGTCATCTGTCCTACTTGTGGCAAGACTTTTGGCCAGAAGAGGGACTTGGATCTTCACTTGAGGATCCATCAGGGTATCCGGCCGTTCTCCTGTCCAGTCTGCGGCAAGACTTTTCCCAGAAAGACCGCGCAAGAGCAGCACATATTGATTCATACCGGCAAGAGGCCGTATATCTGCGACATTTGCGGGCAAACTTTCGCGCAAAAACCGGGACTCATTTGCCACAGAAAGCGTCATCCTGGACCACTGCCGCCGTTGCCTGTAGTgccgattaaaaaaGCATATCTCTCATTATCTCCTCATTATTTCAGGCAACGAAGGGGTAAATCGCGCGGCGTGCACCAATGCGTGAAATGCGGAGCTTGCTTTCGACACACACGAAAACTCGTGGAGCACTTGAAGAATCTGCACAATATCGATCGGGCCTTCAGCTGCGACGAGTGCAACAAGACGTTTCGCAGCCCGATGAACATAGCTCGTCATAAACTGATCCACACCGGGCTGAAGATGTTCGTCTGCGACCTCTGCGAGTATAGCACCAATCAGAAGTCCAATCTGGACCACCATCGTCGCCGACACGCCAAGGATTATAGTTTCAAGTGCGAGATGTGCGACAAAGGTTTCTTCCACAAGACCGAGTACCTGGATCACCAGAACTCGCATACGAATAAGAATCTGTATCGCTGCGAGCACTGCTGCAAGCGTTACTTGTATAAGAAGAATCTGTCGGTGCACCTGGTGACGCATCACACGAGCAAACAGACCGGGAAGAGCCCGAAGACGAGGCACGCGTGCAAATTCTGCCCGGAGAGATTCGTTTACAAGAGACTGCTGAAGAGACACCTAAAGAATCAGCACGGATTCCAGGAACAGGCGCCGACGAAACACTTGTGCGACCTGTGCGGCGCGGAATTGTCCTCGATGAGACGATTAACGGTGCACAAACGCAATCACGTGGGCGAGAAGGTCTTTGAGTGCGACACATGCGACAAGAAATTCGCTAGCAAGGAGAACCTGAGCATTCATAAACGGACCCACACGGGCGACAAACCGCACGTGTGTCCGCAGTGCGGTCGAAGTTTCACCCAGAGGACTTTGTTGGTCATACATTTACGGTACCACTCGGGTGAGAGGCCTTATCAATGTCCAGATTGCGGCAAGAGTTTCGTATCCAACGCTTTGCTCAAGAGGCATCGCAAGGTGCACGAGAAGACCTTGCACGCATGGACGAATAATCACGATTTGAAAATGAAGAACGGGGACCTACCTGATCTTGGACAGAAATTCGAAGGTAGCGAAAAAGTTTGCGAATTGTGTCGAGAAAAATTCCACTTCGTCACGAGATTAGTCGCTCACCTAAGGATAGCCCACGGCATACATCGACCTTTCAAGTGCGTCACTTGTGGCAAGAATTATCCCCAACAATTCATGCTTAACGCCCACGTGAAGAAATCGCACACGCTGAAGACGGTGCCGTGCAACGAGTGCAATTTCATGGGTGTCAACGCGACCGACGTGGAGCGACACAGGAAGCGGCATCATCGAGCTTCGAAATTCACGTGCGAAATTTGCAGCGAGCATTTCGTCGACAAGGATGCTCTGATCACTCACACGACTATGCACAACTTTATGCAGTATCAGCAATGCAGCGCGTGCAGTAGCATCTTCAATGACGTGTACAGCTTGAAGGAGCACAATCGTCTGTATCACTACGATCCCTCGGTGATGTCGGACGAGAAACTCGAGGAATCCAATGAAAACGAAGCCGAGCACAAATGTGACGTCTGTGACAAGGTCTACAAGTATAAGTCGATGCTGAAGCAGCATAAGATCAAGGCTCACGGGGATCCGTCTCTCTACGAGAGACTGACTCCTTATTTAGTTGAGACCCTCAGCCGTTCCTCGTTCTCCTGTTGTTGTCCCAAACAGGGCATTTCAAGCTCAGCTTCTTAA
- Protein Sequence
- MSSLDYLDLCRLCLVKDRVSMPIFEGEGDIRQIFLKITACLPVKVAREDKLPKKICDECVYKLELTYQFWHTTANAEKQLLQWLGEVNMEDKQGYVGNVLNPNGMKPDQNNENRLDGTVMQQVSEHQNNMTMGMMDNMGLTMPMMMSSSTQQQITSVPIDNSGSSVQNVQPVAGPSTQATHDQITQNQTNTSTQQEEEEESSEEDENSDDECDGDEGLPIKEESEEDPNNSRTIEPTTFVNVSLACDEAGPSGLQQQKIADMPEMVMSQTTDVDPKTGYEAGACDSRGIFVFDNESLVMKKWQILEFDGKPYYAFIPEDDAPLPDEDIPEYEDVETEEIEEEEEVEQIEEEDEQIEEEDEQMEDEEQNSADDMKQEFYFEEKGFDSMDEKLYNDDSILNGDVEETAEADAKPITLNGDAVDDKSGGDLYQVKVQGSTVIIEKLTSAEMEAKAEYQEAEEAYNNDEGEIEYLEEEILDSPLSANNPSLPTKTSLKSPGGALKCKVCSEMFDSAISFRKHVAWTHKKKVCIKEDGAYICAVCDYRTLKKSLFAAHLERKHETWSRKRSSNTVFPCHACGFVCRSKHSLQSHFIRKHTDKFEHQCNSCPKKFKVKGDLTNHIRFHHKEKPIKCDICDKLCLNTGSLYVHQKWAHFKPKYECHICKRRMVTQENLDQHLLTQHEKRDKIVCAECGKTFTKKDSFKRHMVVHTGCKPHSCMICKKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGPHPPLPVMPIADLVNEFTKEYVQENEFTKEFVQEIEERIDEEVMADPLNIESIITQKLLECEQTKREESSIIDEERTLEGMNVDLETRKPSPRIVTEGNRSVRRKPTYHLECDHCCRKFLKKSNLAEHLKQHRHQCADCPKSFSLRRYLVSHIARHHHQEMYECSVCKFKSNNKGTLKNHYIRLHTSDYDYACDICGKQFKIKKALNHHVKQNHSEAPPIVCDVCGHFSKNLHALRAHMKYRHYKPEFVCRICRRGMTTQENLEQHLMWHETREKVLCPTCGKRFRRRDLNSHMRVHTGVKPFPCPVCGKTFRRQTAQEQHVLIHTGKRPYICDICGQAFAQKPGLICHRKRHPGPLPPLPVVSVKKIVTEFTKDDSRMDPLNVVDVNNSEYSPVESIECTPEYDSLPNRLQRHITRKRKVSKQENYCTKKDTKKQNTNQIKVEKRKPELFLECATCGKRFSDKPTMIKHMSHHKYQCQTCCQSFSLKRDLKRHIEKVHGPLLYPCSICEYKSSNKCTLKDHFIRKHTSLFQYSCTVCKKQFKIKNDLKQHMNQVHSGEPPVICNICGHACKNLPAIKAHMKYRHYKPAYECKICKRGLTTQENLDQHLIWHERKEKVICPTCGKTFGQKRDLDLHLRIHQGIRPFSCPVCGKTFPRKTAQEQHILIHTGKRPYICDICGQTFAQKPGLICHRKRHPGPLPPLPVVPIKKAYLSLSPHYFRQRRGKSRGVHQCVKCGACFRHTRKLVEHLKNLHNIDRAFSCDECNKTFRSPMNIARHKLIHTGLKMFVCDLCEYSTNQKSNLDHHRRRHAKDYSFKCEMCDKGFFHKTEYLDHQNSHTNKNLYRCEHCCKRYLYKKNLSVHLVTHHTSKQTGKSPKTRHACKFCPERFVYKRLLKRHLKNQHGFQEQAPTKHLCDLCGAELSSMRRLTVHKRNHVGEKVFECDTCDKKFASKENLSIHKRTHTGDKPHVCPQCGRSFTQRTLLVIHLRYHSGERPYQCPDCGKSFVSNALLKRHRKVHEKTLHAWTNNHDLKMKNGDLPDLGQKFEGSEKVCELCREKFHFVTRLVAHLRIAHGIHRPFKCVTCGKNYPQQFMLNAHVKKSHTLKTVPCNECNFMGVNATDVERHRKRHHRASKFTCEICSEHFVDKDALITHTTMHNFMQYQQCSACSSIFNDVYSLKEHNRLYHYDPSVMSDEKLEESNENEAEHKCDVCDKVYKYKSMLKQHKIKAHGDPSLYERLTPYLVETLSRSSFSCCCPKQGISSSAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -