Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.036 16 5.3 0.5 11 26 17 32 12 39 0.83

2 6 0.0034 1.5 8.6 0.3 12 43 76 108 66 109 0.76

3 6 0.00061 0.28 11.0 0.3 5 28 124 147 122 161 0.81

4 6 9.4e-06 0.0043 16.8 2.9 4 44 185 227 173 227 0.87

5 6 0.025 11 5.8 2.6 11 44 248 281 241 281 0.84

6 6 0.14 63 3.4 0.1 17 44 306 331 295 331 0.76

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.036	16	5.3	0.5	11	26	17	32	12	39	0.83
2	6	0.0034	1.5	8.6	0.3	12	43	76	108	66	109	0.76
3	6	0.00061	0.28	11.0	0.3	5	28	124	147	122	161	0.81
4	6	9.4e-06	0.0043	16.8	2.9	4	44	185	227	173	227	0.87
5	6	0.025	11	5.8	2.6	11	44	248	281	241	281	0.84
6	6	0.14	63	3.4	0.1	17	44	306	331	295	331	0.76

Coding Sequence: ATGGCAACGTCAAGCTCAGTAAGTAATACTTGGGTTTTAGATTATTGCACGATAGAAAATAATAAGGCAAAATGCGATATTTGTTCCTGGAATTATAATCTTATTCAAGAACAGTTAGACCAAATATGCACtcacataatatttaaacataaaGAGATTTATCAGAGTATTAGCTCATCATCAGCAATCAGCTTTAGTTCAACAGAATCGACGGAagtttatacaataaaaaattatgacgtCTACTGCAATTTTtgtaatcaaattttttttggaGAAAACAAAACGTTCCGTTATATACAAAATCATATAACGAAAACTCATTCAGttgaaataaataaagcaaAAGAAATCTACAAATGGCTGCAACAACATTTTGGCGAAAATAATATGGATGCAAAATCGTGTCGTTGCTATTATTGCAATGATGACATTCCAAATAAACCAGCATTTTTAATGTTTCATTTGATACAAGTGCATGCGGCTAAAATACCTGAGGCGATCAGACCAACAGAATTATGGGGGTATACTGCAGATTGCAAAGAATGGATGTGGAAATTTgtcacaaaatatttattaacaaaaaatgagGAACATGCAAATTGCAATATTTGTGATAAACGTTTATCTATTACCGTAGATTACACAACTATAAATCGccacatatataataaacataaaacAGATCATGGAAAACGGATTTCATTACAAGTTTTACGAAAAAAGAACTTTTTTTCTATAGAAAACGATCAAGCAAAATGCAATAAATGTTCACATATTTGTTCTATTCGTTATATTGATCAAAACAAGGAACTGGAAAATCATTTATCAAATGAACATAAATTTGATTACGCTCAAATGAATAATTTTCTCAATTGGCTAAAATTTTATcgaaatgtaatttattttcaaacattAGAATGCAATGCTTGCAAGAACATTTctaatgacaattattttagtttaatgaaacattttattgaagaACATCCAATCAAATTTCTCTTACATGTAATATCaaaaaagtaa
Protein Sequence: MATSSSVSNTWVLDYCTIENNKAKCDICSWNYNLIQEQLDQICTHIIFKHKEIYQSISSSSAISFSSTESTEVYTIKNYDVYCNFCNQIFFGENKTFRYIQNHITKTHSVEINKAKEIYKWLQQHFGENNMDAKSCRCYYCNDDIPNKPAFLMFHLIQVHAAKIPEAIRPTELWGYTADCKEWMWKFVTKYLLTKNEEHANCNICDKRLSITVDYTTINRHIYNKHKTDHGKRISLQVLRKKNFFSIENDQAKCNKCSHICSIRYIDQNKELENHLSNEHKFDYAQMNNFLNWLKFYRNVIYFQTLECNACKNISNDNYFSLMKHFIEEHPIKFLLHVISKK

Sequence clustering based on sequence similarity using MMseqs2