Nful000870.1
Basic Information
- Insect
- Nylanderia fulva
- Gene Symbol
- ttk
- Assembly
- GCA_005281655.1
- Location
- NW:3427489-3429938[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.9e-07 0.0012 18.2 0.0 5 38 197 230 193 236 0.72 2 4 8.8e-11 2.1e-07 30.2 0.0 2 39 244 280 243 287 0.86 3 4 0.054 1.3e+02 2.1 0.0 21 34 314 327 300 333 0.80 4 4 1.4e-11 3.3e-08 32.8 0.1 4 39 358 393 355 397 0.93
Sequence Information
- Coding Sequence
- ATGACTGACGACGTTGATGACCAAAATAAAGTCAACCAGAGTTATCACTTTAAATGGGACGATTATCAGAATCACCTGTCCGATGTCGTACGGCAGCTCCTGGAGGAGGATTGCATGATAGACGTCACCCTCTCCGCGGCTGGTCAACGTATACATGCGCATCGCATCGTACTGTGTGCATGCAGCACTTTGTTTCAAGAAGTTCTTAGTCAAGTGACAGAAGATTGTCCAACGATTATTCTGAGCGATATATCTCCTCAAGATATCAAATCAATTATTGAATTCATTTATCACGGTGAGGTTCGAATTCCTGTGGATAATATTAATAGTTTACTGGAGGCTGCACAGTCCTTAAAGATAAGCGGTCTTGTCGATATAAATGGATTTGAAGAAAAATCTAATAAAAGTACAACAGATTCTACAGAAGAAATTGTGGAAGAAATAGATCAAATTGAAGAAAATGCTGAAGAAAATGTTGAATATTTAGAGGATGATTTGCTTGAAGAAAGTACTATTGAAAATTGTACttcaaataaaaagaagaaacgTCGCCGCGAGACTGCAAAGAGAGATTACAGCGATGACATGTTGGCTTCTGCAattaatgatttaaaattaGGACAGACTTTAATAGAAGCTGCTACCAAGCACAATATACCACGCTCGACATTATATATGCGGGCAAAAGCATTAGGCATACATTTAAATGCATCGAGAAACGGATATCCTGAAGAATGTATGAATGCAGCAATAACTTCTGTAATCAGCGGTGCAAGCTTACAACATGCATCAGAAATGTTTAGAATTCCTAAAACTGTGTTATGGAGACGTATACAAAAAGAGGGTTATCAGATCTTACGTCCTGAAACAAAAAGATCGTATGCTTTAGATACACGAGAGGCTGCTGTTAAAGCTTTAGAAAGAGGAGAGAATCTGACAAAAGTTGCATTAGaatttaaaaTACCAAAGACTACATTGTTTAGGGACAAAGCACGACTGGTAGATCAAGGTAAATTGCCTTTGTCATTTTGGAAGAAACGCAAAACAGAAAATGAGGAATTGAAAAAATCACGATTAGAAGAGGCTGTGGCTGCTTGCAAGGGTGGTAAAATGTCGCAAGCTGCAGCGTCTATGACATATCGTATTCCCAAAACTACAATATGGCGAAGGCTTCAGCAAGAAGGAAAAAAGGTGGGAAAACTGTCGAATATAAAAAAGCGACAACATCTGATTGATACATCAGAGCAggataatgaaataaaaatacagGAAGGCTCCAGTTTTAGCTTTTGTGAGATTTCTTCGGAAATACCTGTAACTATTGACGAGAATAATATACCTGAAGattctataataattttaacaacagAGGAAATGGAGGAATTGAATTTTCAAGAAGGAAGACAAATCATTGTAAATGCAgAATCTGGGCAGGAATATATTCCATGTACAATAAGTATTGAAGATAGCTCAAATTATTCAGAAAGTgaaagttaa
- Protein Sequence
- MTDDVDDQNKVNQSYHFKWDDYQNHLSDVVRQLLEEDCMIDVTLSAAGQRIHAHRIVLCACSTLFQEVLSQVTEDCPTIILSDISPQDIKSIIEFIYHGEVRIPVDNINSLLEAAQSLKISGLVDINGFEEKSNKSTTDSTEEIVEEIDQIEENAEENVEYLEDDLLEESTIENCTSNKKKKRRRETAKRDYSDDMLASAINDLKLGQTLIEAATKHNIPRSTLYMRAKALGIHLNASRNGYPEECMNAAITSVISGASLQHASEMFRIPKTVLWRRIQKEGYQILRPETKRSYALDTREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDQGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMTYRIPKTTIWRRLQQEGKKVGKLSNIKKRQHLIDTSEQDNEIKIQEGSSFSFCEISSEIPVTIDENNIPEDSIIILTTEEMEELNFQEGRQIIVNAESGQEYIPCTISIEDSSNYSESES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01077583;
- 90% Identity
- iTF_01077583;
- 80% Identity
- iTF_01077583;