Basic Information

Gene Symbol
-
Assembly
GCA_947037095.2
Location
OX344841.2:1801238-1825113[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 1.5 1.4e+02 4.2 0.1 1 23 633 655 633 655 0.95
2 22 0.00041 0.039 15.4 0.1 2 23 669 690 668 690 0.96
3 22 0.00058 0.055 14.9 3.6 1 23 696 718 696 718 0.99
4 22 1.5e-05 0.0014 19.9 1.9 1 23 725 747 725 747 0.99
5 22 0.00023 0.022 16.2 0.7 1 19 753 771 753 775 0.87
6 22 1.2e-05 0.0011 20.3 0.4 1 23 781 803 781 803 0.98
7 22 0.00015 0.014 16.8 1.7 1 23 809 832 809 832 0.96
8 22 0.89 83 4.9 0.4 3 14 840 851 838 858 0.86
9 22 0.89 83 4.9 0.4 3 14 960 971 958 978 0.86
10 22 0.89 83 4.9 0.4 3 14 1080 1091 1078 1098 0.86
11 22 0.89 83 4.9 0.4 3 14 1200 1211 1198 1218 0.86
12 22 0.89 83 4.9 0.4 3 14 1320 1331 1318 1338 0.86
13 22 0.89 83 4.9 0.4 3 14 1440 1451 1438 1458 0.86
14 22 0.89 83 4.9 0.4 3 14 1560 1571 1558 1578 0.86
15 22 0.89 83 4.9 0.4 3 14 1680 1691 1678 1698 0.86
16 22 0.89 83 4.9 0.4 3 14 1800 1811 1798 1818 0.86
17 22 0.89 83 4.9 0.4 3 14 1920 1931 1918 1938 0.86
18 22 0.0017 0.16 13.5 2.4 3 23 2040 2061 2038 2061 0.93
19 22 5.3e-05 0.0049 18.2 0.7 2 23 2068 2089 2067 2089 0.97
20 22 3.3e-05 0.0031 18.9 1.0 1 23 2095 2117 2095 2117 0.97
21 22 0.0038 0.36 12.3 0.1 1 22 2123 2144 2123 2144 0.97
22 22 0.012 1.1 10.8 0.1 2 22 2165 2185 2164 2185 0.95

Sequence Information

Coding Sequence
atgaaTCAATGTTGCTTTATATGCAACAACAGTGCTAAAGTATCACTGAGGAACTCTGTAAGCATATTTGGTGAATATAATACATTACAATCAGGAAGAAAGTTATCAGAGGTGCTGAGTGATGTTGTTGAGAAACCAGTCGAAGTGAATCAAGTGCATGCCAACATACTATGTAAGAAATGTTTCAATGCCTGCTCCGAATTTGATGCAGTGCAACTTAGATTAAGTAACTTGAAAAAAGAACTTATAGATCAATTTAAATTATCACTGCCCTGTCACCTCTTGAAATATGAAAACTATGAGAAGAATTTTCAGAAACCAACCCCGAAACCAATTACCATTCCGGCCAAGAAAttggttttacccgcatcaaAGTTACAACCCATACCGCCAGCTTTGTTGGTCAAAGTTGGTAAGTTGGCACAATTCTCTTCAGCCCTCAATGCAGCTAAGAGCACATCCACACCAACCGTTAACGTTCAGTTAACAAACAACAGTGTATTCCCGCAATCAATCAAATCTGAAGTTCCAACGTCGGCCAACAATACTGTCGTAACATCAGtgtcaaatacaaaatcattggaaactaaatattttaatacattccctaaagatttcctgtccggcgctgTGATCACGAAACTTGAGGATAAAAACATAGAAattaatgatgatgaagataataTGGAGATTGATAAAGATTGCAGTTCAATGTCAGTGGTACCGGTGTCGACGGGAGACGGAAATAACGTCGTCTTACCTGTGTCGCTGATCAAATCGAACAATGTGAGCGAGTTCTTGAACAGCGAGCTGCCGAGCCTGTCCGACTCGGAGGACACGCAGAACTACGTGCTGGGCAACGTGCAGATCGTGGAGGGAGACGAGGATGAGGATACGGATGAGCGTGAGTGTATTGACGTGCCGAGCCTGTCCGACTCGGAGGACACGCAGAACTACGTGCTGGGCAACGTGCAGATCGTGGAGGGAGACGAGGATGAGGATACGGATGAGCGTGAGTGTATTGACGTGCCGAGCCTGTCCGACTCGGAGGACACGCAGAACTACGTGCTGGGCAACGTGCAGATCGTGGAGGGAGACGAGGATGAGGATACGGATGAGCGTGAGTGTATTGACGTGCCGAGCCTGTCCGACTCGGAGGACACGCAGAACTACGTGCTGGGCAACGTGCAGATCGTGGAGGGAGACGAGGATGAGGATACGGATGAGCGTGAGTGTATTGACGTGCCGAGCCTGTCCGACTCGGAGGACACGCAGAACTACGTGCTGGGCAACGTGCAGATCGTGGAGGGAGACGAGGATGAGGATACGGATGAGCGTGAGTGTATTGACGTGCCGAGCCTGTCCGACTCGGAGGACACGCAGAACTACGTGCTGGGCAACGTGCAGATCGTGGAGGGAGACGAGGATGAGGATACGGATGAGCATACAATAGTCGTAGACAGTGACAACACCGCGTCCATCCTGCGGATGGTGTCCGGACAGAAGATCGTGTACGAGGGCGGGGAGATCTCCCTGGTGATGCCGGGGGATGAGAGCCAGCACGAGGACCAGCAGGACAACGGGGATAGTCAAGACTCGAACGACGAGTCTCAGATAGAGTTGCAAGTGTCGGGGGACGAGGAGACTGCCAACGCGATCATTGCGGCCGCGCAGGAACAAGGCGGCGCGTTCATCAAGGTGGAGTCCGGCGAGATGTTCCGCGTGCGCTCCGTGCACAGCGCGCACGCGCCCGGCTCGCACGTGGTGAGGAAAGATGGCGCCAACTTCGTGTGTCTGCTGTGTCGCGACAACGATATAACAGGAGAGTCGTCCACAGTGATGACGTCGGCTGAACAAATGATGAAACACTTGCGCGTGACGCACTCCGCCAAGACTTACATCTGCCAGTTCTGTGGAGCGGTCATGAGGAAACGGAACGATTACGTCACGCATATAGCGGAACACGCCCAAAAACTAAAGCCGTCCGGTCGCCAGCCCCCGCTCCGCTGCGACGTGTGTGGCAAGACTTACAACAGCAGGACGTTGCTGGCGGAGCACGCCAACATCCACACGGGCCACCGGCCCTACGTGTGCCAGCTCTGCAACAAGACCTTCGCCTCCAAGTACACGCACCAGGCACACATGAAGACACATTCGGTCCGACCCCGTCCGTTCAAGTGTAACGAATGTGGAAAATCGTTCTTAACACAACAAAATCTCAATCAACACGAAAAAACACATACTGGAGTCAAAGACTTCGTATGTAAAGTCTGTGGTAAAGCTTTTAGCACACAACACAATTTAGAGTTCCACGGCGTGGTCCACTCGGGGTACAAGTCGTTTGTGTGTAGCGTGTGTCACAAGGCCTTCGCCAGGAGAGCCGAGCTCAGAGACCATGCCAGGATACATACAGGCGAGCGTCCGTTCTCGTGTGACATTTGCAGCGCGCGCTTCACGCAGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGGTACGCACTCACTTACCATTATACAATATGTGACTCACGCAGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGGTACGCACTCACTTACCATTATACAATATGTGACTCACGCAGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGGTACGCACTCACTTACCATTATACAATATGTGACTCACGCAGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGGTACGCACTCACTTACCATTATACAATATGTGACTCACGCAGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGGTACGCACTCACTTACCATTATACAATATGTGACTCACGCAGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGGTACGCACTCACTTACCATTATACAATATGTGACTCACGCAGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGGTACGCACTCACTTACCATTATACAATATGTGACTCACGCAGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGGTACGCACTCACTTACCATTATACAATATGTGACTCACGCAGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGGTACGCACTCACTTACCATTATACAATATGTGACTCACGCAGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGGTACGCACTCACTTACCATTATACAATATGTGACTCACGCAGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGGTACGCACTCACTTACCATTATACAATATGTGACTCACGCAGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGGTACGCACTCACTTACCATTATACAATATGTGACTCACGCAGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGGTACGCACTCACTTACCATTATACAATATGTGACTCACGCAGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGGTACGCACTCACTTACCATTATACAATATGTGACTCACGCAGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGGTACGCACTCACTTACCATTATACAATATGTGACTCACGCAGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGGTACGCACTCACTTACCATTATACAATATGTGACTCACGCAGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGGTACGCACTCACTTACCATTATACAATATGTGACTCACGCAGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGGTACGCACTCACTTACCATTATACAATATGTGACTCACGCAGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGGTACGCACTCACTTACCATTATACAATATGTGACTCACGCAGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGGTACGCACTCACTTACCATTATACAATATGTGACTCACGCAGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGCGCTCGAACCTGCACTCGCACGTCCGAGCCACGCACCTGGACGACAAGCGCCACCTGTGCCAGCTGTGTCCCAAGAGGTTCAAGAGGAGACGGTTACTAGAATACCACATAAAGGCATCCCACACGGGCGAGCGTCCGCTCAAGTGTCCCATGTGTCCGTCCTCGTTCGTGTACCCCGAACATTACAAGAAACACATACGCATACACAGCGGCGAGCGACCCTACGTGTGCGAGATCTGCGGCAAGTCGTTCAACTCGCGCGACAACCGCAACACGCACCGCTTCGTGCACAGCGACAAGAAGCCCTACGAGTGCGTCACCTGCGGACTCGGCTTCATGAGGAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTACACCCCCCACCCCCCCCCCACCCCCCTCACCCCCCACACACCCCACACTACAGTGCGTCACCTGCGGACTCGGCTTCATGAGGAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTACACCCCCCACCCCCCTCACCCCCCACACACCCCACACTACAGTGCGTCACCTGCGGACTCGGCTTCATGAGGAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTACACCCCCCACCCCCCTCACCCCCCACACACCCCACACTACAGTGCGTCACCTGCGGACTCGGCTTCATGA
Protein Sequence
MNQCCFICNNSAKVSLRNSVSIFGEYNTLQSGRKLSEVLSDVVEKPVEVNQVHANILCKKCFNACSEFDAVQLRLSNLKKELIDQFKLSLPCHLLKYENYEKNFQKPTPKPITIPAKKLVLPASKLQPIPPALLVKVGKLAQFSSALNAAKSTSTPTVNVQLTNNSVFPQSIKSEVPTSANNTVVTSVSNTKSLETKYFNTFPKDFLSGAVITKLEDKNIEINDDEDNMEIDKDCSSMSVVPVSTGDGNNVVLPVSLIKSNNVSEFLNSELPSLSDSEDTQNYVLGNVQIVEGDEDEDTDERECIDVPSLSDSEDTQNYVLGNVQIVEGDEDEDTDERECIDVPSLSDSEDTQNYVLGNVQIVEGDEDEDTDERECIDVPSLSDSEDTQNYVLGNVQIVEGDEDEDTDERECIDVPSLSDSEDTQNYVLGNVQIVEGDEDEDTDERECIDVPSLSDSEDTQNYVLGNVQIVEGDEDEDTDEHTIVVDSDNTASILRMVSGQKIVYEGGEISLVMPGDESQHEDQQDNGDSQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMFRVRSVHSAHAPGSHVVRKDGANFVCLLCRDNDITGESSTVMTSAEQMMKHLRVTHSAKTYICQFCGAVMRKRNDYVTHIAEHAQKLKPSGRQPPLRCDVCGKTYNSRTLLAEHANIHTGHRPYVCQLCNKTFASKYTHQAHMKTHSVRPRPFKCNECGKSFLTQQNLNQHEKTHTGVKDFVCKVCGKAFSTQHNLEFHGVVHSGYKSFVCSVCHKAFARRAELRDHARIHTGERPFSCDICSARFTQRSNLHSHVRATHLDDKRHLCQLCPKRFKRRRYALTYHYTICDSRSARTCTRTSEPRTWTTSATCASCVPRGSRGDGTHSLTIIQYVTHAALEPALARPSHAPGRQAPPVPAVSQEVQEETRSNLHSHVRATHLDDKRHLCQLCPKRFKRRRYALTYHYTICDSRSARTCTRTSEPRTWTTSATCASCVPRGSRGDGTHSLTIIQYVTHAALEPALARPSHAPGRQAPPVPAVSQEVQEETRSNLHSHVRATHLDDKRHLCQLCPKRFKRRRYALTYHYTICDSRSARTCTRTSEPRTWTTSATCASCVPRGSRGDGTHSLTIIQYVTHAALEPALARPSHAPGRQAPPVPAVSQEVQEETRSNLHSHVRATHLDDKRHLCQLCPKRFKRRRYALTYHYTICDSRSARTCTRTSEPRTWTTSATCASCVPRGSRGDGTHSLTIIQYVTHAALEPALARPSHAPGRQAPPVPAVSQEVQEETRSNLHSHVRATHLDDKRHLCQLCPKRFKRRRYALTYHYTICDSRSARTCTRTSEPRTWTTSATCASCVPRGSRGDGTHSLTIIQYVTHAALEPALARPSHAPGRQAPPVPAVSQEVQEETRSNLHSHVRATHLDDKRHLCQLCPKRFKRRRYALTYHYTICDSRSARTCTRTSEPRTWTTSATCASCVPRGSRGDGTHSLTIIQYVTHAALEPALARPSHAPGRQAPPVPAVSQEVQEETRSNLHSHVRATHLDDKRHLCQLCPKRFKRRRYALTYHYTICDSRSARTCTRTSEPRTWTTSATCASCVPRGSRGDGTHSLTIIQYVTHAALEPALARPSHAPGRQAPPVPAVSQEVQEETRSNLHSHVRATHLDDKRHLCQLCPKRFKRRRYALTYHYTICDSRSARTCTRTSEPRTWTTSATCASCVPRGSRGDGTHSLTIIQYVTHAALEPALARPSHAPGRQAPPVPAVSQEVQEETRSNLHSHVRATHLDDKRHLCQLCPKRFKRRRYALTYHYTICDSRSARTCTRTSEPRTWTTSATCASCVPRGSRGDGTHSLTIIQYVTHAALEPALARPSHAPGRQAPPVPAVSQEVQEETRSNLHSHVRATHLDDKRHLCQLCPKRFKRRRYALTYHYTICDSRSARTCTRTSEPRTWTTSATCASCVPRGSRGDGTHSLTIIQYVTHAALEPALARPSHAPGRQAPPVPAVSQEVQEETRSNLHSHVRATHLDDKRHLCQLCPKRFKRRRLLEYHIKASHTGERPLKCPMCPSSFVYPEHYKKHIRIHSGERPYVCEICGKSFNSRDNRNTHRFVHSDKKPYECVTCGLGFMRKQLLYAHMNTSVRTPPTPPPPPSPPTHPTLQCVTCGLGFMRKQLLYAHMNTSVRTPPTPLTPHTPHTTVRHLRTRLHEETAALRAHEHQRTYTPHPPHPPHTPHYSASPADSAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-