Nrev032324.1
Basic Information
- Insect
- Nycteola revayana
- Gene Symbol
- RREB1
- Assembly
- GCA_947037095.2
- Location
- OY855748.1:9404841-9422112[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.17 16 7.2 1.3 1 23 94 117 94 117 0.96 2 12 0.22 21 6.8 0.1 1 21 156 176 156 177 0.89 3 12 0.024 2.2 9.8 0.1 1 23 307 329 307 329 0.97 4 12 0.0013 0.12 13.8 0.4 1 23 338 360 338 360 0.99 5 12 0.0008 0.075 14.5 2.0 1 23 366 389 366 389 0.97 6 12 0.0032 0.3 12.6 1.6 1 23 748 771 748 771 0.96 7 12 0.00011 0.01 17.2 0.7 2 23 965 986 964 986 0.97 8 12 0.027 2.6 9.7 5.3 1 23 992 1015 992 1015 0.97 9 12 0.19 18 7.0 0.6 1 23 1048 1072 1048 1072 0.93 10 12 0.058 5.4 8.6 1.0 1 23 1094 1117 1094 1117 0.95 11 12 0.002 0.19 13.2 0.2 2 23 1157 1178 1156 1178 0.96 12 12 0.031 2.9 9.5 5.3 1 23 1184 1206 1184 1206 0.97
Sequence Information
- Coding Sequence
- ATGCAGGGTGCCGCCACTGCGCCCGCGCCTCCCGCGGCCGAACCGCCTTCTTCACAACACATAAAATCAGAGGAGGTCATCAGTGAAGCCAAAATCGAGGCCGACGAAGAAATGGACGCCATTCAAATTGAAAGGCAAGAGCTCCGAGCCACGAGGACGACGAGTATCGACAGTGACAACAGGTCCGATAGAAGTGATGAAGAAGACTTGAGGAGAGCTCGCAAAAGGCACGCTTCAACATCGCCTTCACCAATACCAATGGACAAAAGAATTGCCAGATTCGAGTGCCCCAAGTGCTTACAACGATTTGACTCGATCAACGCTTTCCACATCCATCGGTATACAGCCCATAGTGATGACACCAAAACTAACTTTGACGATCTCGCATACTCCAACAAGAAGTTGCCTGATATCGCCCGAGGAATTTGTGAAAAGAATCCTCACATATCAATAACGGAACAACGATATCGATGCGAGTATTGCACCAGAGATTTTCCAAGCGGACCTGCCTTGGACGTGCACAAAAAATCCTGTCCCTCGGCTACCCGCATCCCGAGCCCAGACAGTAGGGACCCTCGCGAAGATTTCTTGGCCAATTTAGAACTTAGGAACAGGTTCTGCATACCAGGCACGTTGACACCGCCTATGGAAAGATTTTCTAAATATGACGATACTCACCTATCCTCAAATGGTTTAAGACATATTAATGCGGGTAGACCCCCTCCGGATTTGGCAGATATTGAATCGATATTAAACGTCACTTCGGCTAGTGGTCTCTTACAGAGCTTGACTGGCAATCGTGTAGCTTTAGAAAGCGCTGTGCTTACACCTCCGGACACAATTGGCAAAGAGAGAGACCAAGAAGAAACTCAAGACAATTTCGCAGCTGAATTTAGGCGAATGAAACTGCGCGGAGAGTTTCCTTGCAGATTGTGTCCAGCTAAGTTCCCCAACCTCAGGGCGCTAAAAGGGCATAATAGAGTACATTTAAGTGGAACAGGTCCGGGACCTTATCAATGCAACATGTGCCCTCATGCGTCCTTAGATAAGGCAGCGTTGGTGCGTCACATGCGTACACATAACGGTGACCGTCCTTATGAGTGTGCAGTGTGTAATTACGCTTTTACTACGAAAGCAAACTGTGAGCGTCACTTAAGGAACAGACACGCCAAAGTAACGAGAGAAGATGTCAAAAGATCCATTATCTATCATCCGTCAGAAGATCCTAATAACGATGAAGTCAACTCAAAGCTCGCAAGAGATGACGTGAAACGCTCTCTCGCTTTCCATACTCCAGATATTGATAGACGGAATGAAAATACTGGTCGTACAACACCGTTGTCTCACTTCACTCCAAGCTTTTTGGCTGATAGACATCCAGTAGTATCGCTTACCAACAAATCTTTGTCCGATGCACCTATAACACCAAGAGAACAAGAGCAACCTAAACCTTTAATCAAAGTAAAAGGTATTGGTCAACTCACTCAAATACCTGAATTCCGACCACCGGAAATATCTTACAAGCTCAATGATATACGAGCAGAATCATATGATGAAGCATCGCCGGTTGATTTAAGCATTAGCGATAATAATAGCTGTGAGCAATCAAACCCCCCAGATGTTCTAGACCTTAGCAAGAAGAAACGAGATATTGATTTTGAGGAATCTAAAATCCCACCACGTTCGACTTTCGAGAATGATCAAACAAACGCTGCCGCATCAGCTTTCGAAAAAACAAGATTCCTTTTAGCTCagcaaagaatttttgaaaactcTCTCCCAAAAATAGATCCCGCATTCTATGCTTCACAACTGTCACAAATTTACGCAGGTGCCGTCCCGGGAATTCCTGGACTACCCTTGCCTCCATCCTTTCCTATCGCGCCATACTTATTGCAACCCTCGATTTTTCCTCACCCAACTGATTCTCAAGAACTTGCTGAAATAAAACAGCGAATACAGAAAGAAATTCTTCGAGGACTCAGCATATCTGGTGGTGGCCTCAACATGTCCGGTGGGAGACTCGTTCCTAACGACCAGGATAGTCCACTGAAGCTGGAATCTGAAGAAGAGGATCAGAAACCTCAGTCAATTTCTCCCATACCTTCACCACACTCTGAATCACCTCGTCCACCGATGAACAACACTCTCATACCACAGACGGATTCAGTAAAGATGGTCATAAAAAATGGGGTGCTAATGCCTAAACAAAAGCAAAGAAGATACCGAACAGAAAGGCCATTTTCTTGCTCTCAATGTTCTGCAAGGTTCACTCTTAGATCTAATATGGAACGTCACGTAAAACAGCAACATCCTCAGCACTGGAGTTTCAAACGGCCGGGAACTAGAGCTCCTCCTCCCTACCCGTCGTCCGATAGTTTGACTGACCGAATGAAGTTTGCCTTATTAGCTCGCCACCTGGAAAGACCGCTTCACCAATCAGAACGATCACCTATAAGACGAGATTCTGACGAAGTAGCAGACAATGAAGAAGACGAAGACGATAACCTGATCATCGATGAGGAACCTGATCAGGACACCAAGCCCGAAGATCATACCGCAGCACGACAAGCGGCCGCTGAAATTCTTATGGCCACGCGCCAACAAGAAATGCACAAGGATTTTGATCTCAAAATCGCtgggaatttaataaataaacccaTTCCAATCAATAATGAGAAGACTGAAAATACTAACACTACTTCACAATCGCAAGAGCCCTTGATACCGGTGTCTGTACCAACACGCAGTGATGAGGAGGAAGATGAAGAAGGACTTGTTGCTTCTACCAGCGAGGGCAATAACTCTGGCAGCGacgaaaataaATCTGAAACCGATTCAACACAACCACCCAAAAAGAAATCGGCCTACAGTCTCGCTCCAAACCGTGTTGTCTGCCCCCACTGTGACAGGAAGTTCCCCTGGTCATCATCACTACGCCGCCATGTTCTGACGCATACCGGTCAGAAACCATTCAAGTGCCCACACTGCCCACTTCTCTTCACAACAAAATCCAACTGTGACCGTCACCTGCTGAGAAAACACGGGGGTTCTGCCAAAGCTATTCTCGCAGAGCCCATCCCTGATACCATCTCTCAACCTCAGGCACTGAATGACACGCGATCAGTCCCAGAAAGACCTTTCAAGTGCGCTACTTGTCCAGCTAGCACTTTTTCGTCGTTAGAAACTCTGAAGAAACACGTTTCCTCAAGACATACTACTGATGAACCTGGCTCCCCGAAACAAGAGGCTGAAGAAAATAATGATGGCAGTTTAGTTTTCAAGTGTCATTTGTGTGAAGCGTCGTTTGGTGATAGAAGCGGGGCTCTTTACCATTTGAAGAATAGTCATGTGACGGAATACGACCAGCTTGTCAGTAAAGGAGCTTTAGATGCCGCTAGTGATAGGAGTGAGAGCGCTGATGACGACGATAGAAGCAAGATTCATGATTATGCTAATAGGAAGGTTGTCTGTGCATTCTGCGTCCGTCGTTTCTGGTCTGCAGAGGATCTACGTCGGCACATGCGAACGCACTCTGGGGAGAGGCCATTCGCTTGTGACTTATGCCGGCGAAGATTTACTCTGAAACACAGCATGCTGCGTCACCGTAAGAAGCACAGAGAAGAAATAACTGACGATGAAGAAGTGTCACCGCCTGATACGCCACTGGAGGATAATCTACCTAATGGATACCGTTATCAAGACGACGATGGCTCTGGCAGCGAGATCCCAAGCAATGTCAACAACAACAACTCTCCTCCCTCCGCGCGTTACGAGAAAAAGCTCAAACTAGACATGACGTCACGCAAATACTCGTCTGAAGCCGAAAACGACACTGAAAACAGTGACCTCATCGGCAAGTTACTTGGTATCCCGGACAAAACCATCAACAAGCTACTCTCCTCCGCAGACGAAGCCGCGAAAATACTAGGCGTCAACAAATGA
- Protein Sequence
- MQGAATAPAPPAAEPPSSQHIKSEEVISEAKIEADEEMDAIQIERQELRATRTTSIDSDNRSDRSDEEDLRRARKRHASTSPSPIPMDKRIARFECPKCLQRFDSINAFHIHRYTAHSDDTKTNFDDLAYSNKKLPDIARGICEKNPHISITEQRYRCEYCTRDFPSGPALDVHKKSCPSATRIPSPDSRDPREDFLANLELRNRFCIPGTLTPPMERFSKYDDTHLSSNGLRHINAGRPPPDLADIESILNVTSASGLLQSLTGNRVALESAVLTPPDTIGKERDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDDVKRSLAFHTPDIDRRNENTGRTTPLSHFTPSFLADRHPVVSLTNKSLSDAPITPREQEQPKPLIKVKGIGQLTQIPEFRPPEISYKLNDIRAESYDEASPVDLSISDNNSCEQSNPPDVLDLSKKKRDIDFEESKIPPRSTFENDQTNAAASAFEKTRFLLAQQRIFENSLPKIDPAFYASQLSQIYAGAVPGIPGLPLPPSFPIAPYLLQPSIFPHPTDSQELAEIKQRIQKEILRGLSISGGGLNMSGGRLVPNDQDSPLKLESEEEDQKPQSISPIPSPHSESPRPPMNNTLIPQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSFKRPGTRAPPPYPSSDSLTDRMKFALLARHLERPLHQSERSPIRRDSDEVADNEEDEDDNLIIDEEPDQDTKPEDHTAARQAAAEILMATRQQEMHKDFDLKIAGNLINKPIPINNEKTENTNTTSQSQEPLIPVSVPTRSDEEEDEEGLVASTSEGNNSGSDENKSETDSTQPPKKKSAYSLAPNRVVCPHCDRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSAKAILAEPIPDTISQPQALNDTRSVPERPFKCATCPASTFSSLETLKKHVSSRHTTDEPGSPKQEAEENNDGSLVFKCHLCEASFGDRSGALYHLKNSHVTEYDQLVSKGALDAASDRSESADDDDRSKIHDYANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEITDDEEVSPPDTPLEDNLPNGYRYQDDDGSGSEIPSNVNNNNSPPSARYEKKLKLDMTSRKYSSEAENDTENSDLIGKLLGIPDKTINKLLSSADEAAKILGVNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01265283;
- 90% Identity
- -
- 80% Identity
- -