Nrev013180.1
Basic Information
- Insect
- Nycteola revayana
- Gene Symbol
- -
- Assembly
- GCA_947037095.2
- Location
- OX344845.2:3906051-3907469[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0012 0.11 14.0 2.0 2 23 146 168 145 168 0.95 2 10 0.00026 0.024 16.0 0.8 2 21 174 193 173 194 0.94 3 10 3.1 2.9e+02 3.2 5.5 1 20 216 235 216 238 0.92 4 10 3.4e-06 0.00032 21.9 1.6 1 23 244 266 244 267 0.95 5 10 0.00024 0.022 16.1 3.2 2 23 275 296 274 296 0.98 6 10 6.6e-05 0.0061 17.9 0.3 2 23 302 323 301 323 0.98 7 10 2.9e-05 0.0027 19.0 0.4 1 23 329 352 329 352 0.97 8 10 0.0044 0.41 12.2 2.4 1 23 359 381 359 381 0.98 9 10 0.99 93 4.8 0.3 2 23 387 408 386 408 0.94 10 10 0.084 7.8 8.1 4.5 1 23 413 436 413 436 0.97
Sequence Information
- Coding Sequence
- ATGGAGAAAGTTCATCTTTGTGTGTGCCGAGTTTGTTTGCGTAAAGATATCGGATCTAAAAAATGTCTCTCGGTGTTCGAGAGTTATGAAGACAGTCTTGTATCTCAGCAGATCACCTGCTTAGCCAATGTAAAAATAAGCGAGGGCGACGGACTTCCTGACAGAATATGTCCCGACTGTTTGTTACAACTTGGCACAGCACTAACATTCAAACGAAAATGTGAAGCTTCAGACAAATTCCTTCGCAGCATAGAAATCAATGAAATTCCCATTGACTATAAAGGTGAAGGTGACTTATTGGTGAAGAAGGAAATTGAAGCCGAAGACAATAGTTATGCAGAAGACCTGTCTTATGAATACTCTGATCCActattgaaaaatgaaaataaagcaGAACATGTACCCAAGAAAAGCAGAAGTATAGATCTTAACCTAATTTGTAATGAATGTAATGGatcttttaaaagtaaatgCAAATTGAAAGTGCACTGGAACAGAGTTCATCTTCCAGACAAATTAACATGCCCTACCTGTAAGAGAATGTTCAGTTCATACAAATCATTTAATAGACATGTGAAAGCTAAATCACGTAACTGTACATCAGCCAATGAAGTGTATATTGAAGGTCGGGGGAAGTCAAGAGAGTTTCACTGTAAACATtgttcatttaaaagtaaaaaactcTATGCTTTTAAGAGTCATATTCCAGTACACACTGGTGAGAGACCATTTGAATGTAACAAATGTGATAAAAAATTTACCCAATTAAGTGCACTCCTCGCTCACAAAGAAGTTCATCATATGGAATATAGACTTGAGTCAACATGTCATATTTGTGGAAAATTCTTTAAAGGACGTAAGAGAATCACTGATCATATACGGACTCATAAACTAAGTGCAGTACAATGTgacatttgtaatttaattttgaagaacAAGGGCAGTTTGATACAACACATGAAACGTCACAGTGGAGTGAAGGCGTTTTCATGTGAAATATGCCCCCTCCGTTTCTTCACTTCAGCTGAATTAATTACTCACAGAAGAAAAGTTCATTTGAAacacaaacataaatataaatgtgaCTTATGTGAATATTCTGTTAACCAGCATGATGCATTTATAAGACACAAATCTAAACATTCAGGCACTAATGTTCCATGCCTTACATGCGGATCATTTTTTGATGACATTCAGAAGTTCGAACTGCATAAGAAATTGCACATAGAGAAAAAGTATGCATGTCCACACTGCAGTAATAAATATGCAACAAACAAATCAAGAAATACTCATAAACGTAAAAAACACCCTGATTTGGTGGAAAGATCAGGTACAAATGTgaagaaaaaaattgtcaaaagTATTGGAGATGTAAAAAAAGAGTGTACTATTGAGATTTTCCCTGAAAACCCTTGTTGA
- Protein Sequence
- MEKVHLCVCRVCLRKDIGSKKCLSVFESYEDSLVSQQITCLANVKISEGDGLPDRICPDCLLQLGTALTFKRKCEASDKFLRSIEINEIPIDYKGEGDLLVKKEIEAEDNSYAEDLSYEYSDPLLKNENKAEHVPKKSRSIDLNLICNECNGSFKSKCKLKVHWNRVHLPDKLTCPTCKRMFSSYKSFNRHVKAKSRNCTSANEVYIEGRGKSREFHCKHCSFKSKKLYAFKSHIPVHTGERPFECNKCDKKFTQLSALLAHKEVHHMEYRLESTCHICGKFFKGRKRITDHIRTHKLSAVQCDICNLILKNKGSLIQHMKRHSGVKAFSCEICPLRFFTSAELITHRRKVHLKHKHKYKCDLCEYSVNQHDAFIRHKSKHSGTNVPCLTCGSFFDDIQKFELHKKLHIEKKYACPHCSNKYATNKSRNTHKRKKHPDLVERSGTNVKKKIVKSIGDVKKECTIEIFPENPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -