Nrev006798.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nycteola revayana
Gene Symbol
-
Assembly
GCA_947037095.2
Location
OX344841.2:1216453-1220539[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.16 15 7.2 0.3 1 23 245 268 245 268 0.94
2 16 7.3e-06 0.00068 20.9 2.2 1 23 273 295 273 295 0.99
3 16 0.0034 0.32 12.5 0.8 1 23 325 348 325 348 0.96
4 16 0.0088 0.82 11.2 0.6 2 23 409 431 408 431 0.95
5 16 0.0006 0.056 14.9 1.2 1 23 437 460 437 460 0.92
6 16 0.043 4 9.1 0.7 2 21 464 483 463 484 0.93
7 16 0.0019 0.17 13.3 0.2 1 23 492 515 492 515 0.95
8 16 0.03 2.8 9.5 0.4 2 23 556 577 555 577 0.95
9 16 0.0017 0.16 13.5 1.4 1 23 583 605 583 605 0.97
10 16 0.00029 0.027 15.9 1.6 1 23 641 663 641 663 0.96
11 16 0.0067 0.62 11.6 0.1 3 23 669 689 668 689 0.94
12 16 0.001 0.098 14.1 1.5 2 23 709 731 708 731 0.96
13 16 0.00044 0.041 15.3 2.7 1 23 737 759 737 759 0.98
14 16 0.0028 0.26 12.8 5.8 2 23 766 787 765 787 0.96
15 16 3.3e-05 0.0031 18.9 2.1 1 23 793 816 793 816 0.97
16 16 1.9 1.7e+02 3.9 1.0 2 23 822 844 821 844 0.94

Sequence Information

Coding Sequence
ATGGCTGAAGATGAGAACTTTCCAACACCTGAAGATAACTCCAGCAATCTTGACTGGTTGAAGCACAAACTTACAACGTTGTGGTCGGCATCAAAATTCTGTGGGCTCTGTTTAGAAAATAATGGCAACTTTTGTTCCGTCGACATGGAATTTGTGATTGGGAAGCAGCCCATATCTAAATGTTTGCAAGATAttgttaattatgtttttaatgaagatATTGAAAATGTGATGTCCAGTCCTTACATATGTGAGAGTTGTGTGGAGAAGACAATAAACTCTTACCTATTCATCAGCAACACTAAACAACTGTCAAAAATCATAATCAATTGTGTTACGGATATTTACTCCAAAGTCATTGATATCAGCGGACAACTAGATGATACACAGAACTATGATAATTCTAATGTAATGATTGTCCTTGAAAGTGATGAGGATTTATACAAAACTATTGTTGATATGAGATCAGTTACTGAAATACTGCCCACTGCATTACCAAAGACTTTGCATGTCAAGGCTGAGCCTAAAGAACCTGAATTTAAGAAACTGATTCAGCCAGATGTAAAGCCGGTaccaaaaataatacatactaAGAGTGTGGAAAAAATAGAGGATTATACCAAAAAAGTGATCAAATCTGAGGTCACTCCAAATATATCATTAAAAGGAGGTCAGCTTGTCATCAAACCTATGAACACTGTTAAATCAACTACTGTACCCAAGTATAATGTTTATGAGTGTGCCAGTTGTCCGGATATATTCACAACTTATAGATCCTTGAAAGAACATGAGAAAGCAAAGCATAAGACGTCTGTTTACCGATGCACTCTATGCGATAAAGTGTATAACACACAACAATATTTGAACATTCATTACAAAACACATTCAGTTGTTCGTTGTAAATTATGTCAATCAATACTACCAGAAGATGAACTAATGGAACATTTACGATCAGTCCATGCTAAATTGGTGTACCCATGCAAATTCTGTGACTTGGTATACTATACACAAGAGTCTTTAGACacccattttaaaataagtcatttagttaatgatattaaaacaaaatctcAATGCATAATGTGTCTAAGAAATTTTTCAGATCAAAAGTTGAAACAACATAAATGCAAGTTTGCTTGTTCGGAATGTTTTGTGATGCCCTGCATTCATTATAAGTTCCTGATGTCTTATAGGGAACAAATTTTAAATCATTCGAATACTGTTCAATGTGTTTTTTGTGATTATGTAACGAAGCGTAAAGAACATTTGATTGGACACGCTAATAGAGAACATTTAGACCACCATCCCTTCACATGTGGTGACTGCGGACAACAGTTCTACACTAAATTGAGTTTAAAAACTCATCTTGTACAATTCCATCAAGATCTTTGCTGTCCATATTGTGATTTCGAGCTAAAAGATAACAACACTTTAGAAAGTCACAAAAGAGCATGTAAAACTGTTATTCGGGCGTACTCTTGTAACCAATGCGTTGCGTCTTTCGATTCGGCTGAAGAATTGACTAAACATGAGAACTTAAAACATAATGAAGGTGTTCATGCTTGTACATTATGCAAGAGTAAATTCCTGACTGCTTTAGAACTACAAGAACACCATGCTCGAATTCACGGAGGCATACAATGCAAGAAGCGACGGAAGCACATCGAATGTTCCCTATGCAatcaaatgtttaaaaatattaaagagatGCTACAACATGAACAGTTACACGACCCTGATGATGTTTATCCTTGTAAAGTGTGTCCGAAACAGTTCAAAACGTTGATGAAGTTGTATCTCCATAATCAGAGGCATTACACTAATAGAATAAAATGTGATGGATGTAATAAAAAGATAGCTGCCTCCTTCTACGCCCAACACACAGTGAAATGTCCATATGTAAGAGATGCTGCATTGGGCCACATATGCGATGTCTGCGGTAAATCATTCCACATTGAATCATTACTTCGATTGCATCTAAAAATTCATATGGACCCAGAACCTTGCCCTCAATGCGATAAGATCATTAAACCTTCTAGTTTGAAACGGCATATGGAGCAAGTGCATGGTGTTGAAGATAACGAGAGGTCGAAAAGAAAGTCTACCCAAAGCAAGTTGAATATAGAATGTGAATTATGTGGACATGTAGTTAGGAAAAAGTGCGATTTAGAAGCTCATATGAACCGTTACCATTTGAAAATTAAACCATACGTCTGCCATGTTTGTAATAAAGACTTTTGTGGCAAAGTGCGGTTGAAAGAGCATATAGCAACCCACACCAATGATAATAGTTGCGTCTGTTCCGTATGTAATAAGAAATTTGCGAATCGTGTTTGTTTGAAAATGCATTTCCGCATGCATACTGGGGAGTCGCCGTACTCCTGCGACATTTGTGGGCAAAAATTCAGGTCCTCGAGCATGATGAAGACACACAGATTAAAGAAGCATTTAGAAAAAACTGTTTCGTGCCCGCTATGTGATAGTATGTTCTACATTGTAAGGGATATGCGACATCACTTTAAGAAAGTTCATTGGAAGTTTAAAGATCGGCCTTTCGATCCTAGGGAAGTCAGTGAATTGTCGCCAGAACATTACGCGTTGTTTGAAGATGGAAGATTACCTAAATTAGGTAAACCTATTTGA
Protein Sequence
MAEDENFPTPEDNSSNLDWLKHKLTTLWSASKFCGLCLENNGNFCSVDMEFVIGKQPISKCLQDIVNYVFNEDIENVMSSPYICESCVEKTINSYLFISNTKQLSKIIINCVTDIYSKVIDISGQLDDTQNYDNSNVMIVLESDEDLYKTIVDMRSVTEILPTALPKTLHVKAEPKEPEFKKLIQPDVKPVPKIIHTKSVEKIEDYTKKVIKSEVTPNISLKGGQLVIKPMNTVKSTTVPKYNVYECASCPDIFTTYRSLKEHEKAKHKTSVYRCTLCDKVYNTQQYLNIHYKTHSVVRCKLCQSILPEDELMEHLRSVHAKLVYPCKFCDLVYYTQESLDTHFKISHLVNDIKTKSQCIMCLRNFSDQKLKQHKCKFACSECFVMPCIHYKFLMSYREQILNHSNTVQCVFCDYVTKRKEHLIGHANREHLDHHPFTCGDCGQQFYTKLSLKTHLVQFHQDLCCPYCDFELKDNNTLESHKRACKTVIRAYSCNQCVASFDSAEELTKHENLKHNEGVHACTLCKSKFLTALELQEHHARIHGGIQCKKRRKHIECSLCNQMFKNIKEMLQHEQLHDPDDVYPCKVCPKQFKTLMKLYLHNQRHYTNRIKCDGCNKKIAASFYAQHTVKCPYVRDAALGHICDVCGKSFHIESLLRLHLKIHMDPEPCPQCDKIIKPSSLKRHMEQVHGVEDNERSKRKSTQSKLNIECELCGHVVRKKCDLEAHMNRYHLKIKPYVCHVCNKDFCGKVRLKEHIATHTNDNSCVCSVCNKKFANRVCLKMHFRMHTGESPYSCDICGQKFRSSSMMKTHRLKKHLEKTVSCPLCDSMFYIVRDMRHHFKKVHWKFKDRPFDPREVSELSPEHYALFEDGRLPKLGKPI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-