Nrev028799.1
Basic Information
- Insect
- Nycteola revayana
- Gene Symbol
- -
- Assembly
- GCA_947037095.2
- Location
- OX344860.2:540498-542498[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0046 0.43 12.1 0.2 2 23 188 210 187 210 0.92 2 12 0.051 4.8 8.8 1.1 2 23 246 267 245 267 0.96 3 12 0.013 1.2 10.7 0.7 2 20 273 291 273 293 0.93 4 12 0.0046 0.43 12.1 0.5 2 23 321 343 320 343 0.91 5 12 0.18 17 7.1 4.5 3 23 380 400 379 400 0.97 6 12 0.0062 0.58 11.7 1.0 1 21 405 425 405 426 0.93 7 12 0.00029 0.027 15.9 0.5 2 20 448 466 447 469 0.92 8 12 0.00013 0.013 16.9 0.1 3 23 478 498 476 498 0.96 9 12 0.0064 0.6 11.6 2.7 1 23 506 528 506 528 0.98 10 12 1.7e-06 0.00016 22.9 3.5 1 23 534 556 534 556 0.98 11 12 1.4e-06 0.00013 23.2 3.7 1 23 562 584 562 584 0.98 12 12 0.00065 0.061 14.8 4.1 1 23 590 613 590 613 0.97
Sequence Information
- Coding Sequence
- ATGAATGAGTCAGGAGATATTTATTGTCGTTTATGTGCACAACAAAAATTGCTAAGTGACATCCTACAGTCACCGTCTGACAATGAACTATGGTCAAAAGTATCCATCAAACTGTTGAGAATTCATGCAGAAATTGATGTTGACGatttaattttaccaaaaacaaTTTGCTTCACATGTCTGAAATCATTGGACGACGCTTTCCAATTTGTTAAAACTATAGAAGACGCCCAAATTACACTTAAAACTATTCTATCTGACAATTCAAATGAAACTAGCATTAAAATTGAATTGGAAAATGAAGGTGGTGGTAGAATTATAACAGAAAACCTTAATTATATGGATCAACATTCTAATAAGATTCTCATTGGCACTGAAAATGAATATAATTCTGATAAACAACTTAAATCAGAACCCAATACAAGTGACGATGAACATTCATCCACAAGCAGTACAAAAGGAGAAGTAAAACTAAAAAAGCCACGTAAACAGAAAACTACAAAGACTGTATCTAGCacttcatcattaaaattaGAATGTACATGGAAAGATTACAGTTGGAAATGTTCGTTATGCAATGAAATATTTCAAATGCGTTCAGATTTAACCAACCATGCTATGGCCCAACACGGACGATGTAACACATATGCTTGCATTGACTGCAACAGCAAAAGATCTAAACTcgattattttattcatcatgTACAGAAAGAGCATAAACCGATCCTAACAAAAACCTGCTACATTTGCTTCGAGACACTAACTTCAAGTTATTATTACAAAAGTCATGTCGCTAAACATTACAAAACGAAAAATGTATGCCCCGGTTGCGAAACCTGTTTTCAATCATCTGAAGAATTATACAatcataaagataaatattataaatgcaactTAAAATCTAAACCTCCTATAGATGATGAGGAAACAGCCAATCTGACGTGGCAACATTACAGTTGGAAATGCGTAGTCTGTGAATACCATTTCGACAATTCTGAAGAATTAATAAAGCATTCTATGGAATCCCATAACATGTGCAATCCTTTTACCTGCATTGAATGTAATACAAGAAAATTTTGTTTAGACGTTTATATCAAACACATACAACAGCAACACCGGAAATATTTGACACGGTCTTGTTACAAATGTTATAAGCAATTCAGTACTCTAAacaagactaacaaacatagaTCCACACACAAAACATCCAAGTTTATATGCAATGGCTGTAACTCATGTTTTAAAAATGCAGATGAATTAGATTTACATAAGAAGTCATATTTCAAAAATGCATTACGTATAGCAATACCAAAAGAATTTGAAGACATGTCCGATGGTTTAAAATGTAGAGTTTGcaacaaaatatatactaacaaAGCAAATTTAAACATACATCTGTGGAAACACATGGAAcgtgacaaaaatataatatgtgacATCTGTGGGAAATTGTTCTACGACAGTAATTCTTTACAATTACACATTTATAGTCATCAAGAAGAACAAGAGAAGCCGTACAAATGTAAAATTTGTAATGCTGAATTCAAATTGCATTCCAGACTTAGATATCACGTTGCAAGACATGATCGAACAAACTCATTTACATGCGATATATGCAGTAAAAGTTTCTGTTCTAAAGAATACCTCAGTCGACACATTAAAGTTCATTCAGACGATTTACCATTTACTTGTACAACGTGTAACAAATCATTTAGACGTAAAGCCTTTCTGACACGTCATATGCTGCAGCATACAGGAGTCAAAAGCTATTGTTGTGATATATGCCAACGGGATTTTCTGAGCTGGTCGAACTATAACAAACATATGAAACGTAAACACAATACGGACATGTCCAAGAAGAAGCGTGATTCAAATGGATTGTTTGTGAAACCTGTGGAGCTGAATGAGAATatgacagaatggaagaaagcGGTGTCAGTGCCTTTGAGGGCacgtaaacataaaaaagtacagGAAGAAGACTCAATCAGAGACAGTTAA
- Protein Sequence
- MNESGDIYCRLCAQQKLLSDILQSPSDNELWSKVSIKLLRIHAEIDVDDLILPKTICFTCLKSLDDAFQFVKTIEDAQITLKTILSDNSNETSIKIELENEGGGRIITENLNYMDQHSNKILIGTENEYNSDKQLKSEPNTSDDEHSSTSSTKGEVKLKKPRKQKTTKTVSSTSSLKLECTWKDYSWKCSLCNEIFQMRSDLTNHAMAQHGRCNTYACIDCNSKRSKLDYFIHHVQKEHKPILTKTCYICFETLTSSYYYKSHVAKHYKTKNVCPGCETCFQSSEELYNHKDKYYKCNLKSKPPIDDEETANLTWQHYSWKCVVCEYHFDNSEELIKHSMESHNMCNPFTCIECNTRKFCLDVYIKHIQQQHRKYLTRSCYKCYKQFSTLNKTNKHRSTHKTSKFICNGCNSCFKNADELDLHKKSYFKNALRIAIPKEFEDMSDGLKCRVCNKIYTNKANLNIHLWKHMERDKNIICDICGKLFYDSNSLQLHIYSHQEEQEKPYKCKICNAEFKLHSRLRYHVARHDRTNSFTCDICSKSFCSKEYLSRHIKVHSDDLPFTCTTCNKSFRRKAFLTRHMLQHTGVKSYCCDICQRDFLSWSNYNKHMKRKHNTDMSKKKRDSNGLFVKPVELNENMTEWKKAVSVPLRARKHKKVQEEDSIRDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -