Nrev005391.1
Basic Information
- Insect
- Nycteola revayana
- Gene Symbol
- -
- Assembly
- GCA_947037095.2
- Location
- OX344840.2:7428813-7432268[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.051 4.8 8.8 0.2 3 23 2 23 1 23 0.94 2 16 0.077 7.2 8.2 0.7 2 23 94 115 93 115 0.95 3 16 1.4e-06 0.00013 23.2 2.0 1 23 119 142 119 142 0.96 4 16 0.0061 0.57 11.7 0.9 3 21 149 167 148 168 0.93 5 16 0.0019 0.18 13.3 0.2 1 23 175 198 175 198 0.92 6 16 0.0014 0.13 13.8 1.1 1 23 205 228 205 228 0.97 7 16 9e-05 0.0084 17.5 2.3 1 23 233 255 233 255 0.97 8 16 0.00074 0.069 14.6 3.2 1 19 261 279 261 283 0.95 9 16 0.39 36 6.0 0.1 2 23 372 394 371 394 0.90 10 16 1.3 1.3e+02 4.3 3.4 2 23 421 442 420 442 0.95 11 16 0.013 1.2 10.7 2.1 1 23 446 469 446 469 0.96 12 16 0.6 56 5.5 0.4 3 21 475 493 474 494 0.94 13 16 0.023 2.1 9.9 1.0 1 23 531 554 531 554 0.96 14 16 0.17 16 7.1 2.3 1 23 559 581 559 581 0.95 15 16 1.9e-05 0.0018 19.6 1.5 1 20 587 606 587 609 0.94 16 16 9.9e-05 0.0093 17.3 1.8 1 23 615 637 615 638 0.96
Sequence Information
- Coding Sequence
- ATGTGCGTATACTGCAGCGAAAATTACTCGGATCCCTCCATATTCCGCCAACATATGAAGGACGAACACAAAACCTTCGAAGTACGAAATGCCTTTGTTCATTGTGCCTATGAAGGGTATCTCAAAGTAGATTGTACTGAGATCAGCTGCAGGATCTGTGAGGTGTATTTTGAGAAAATTACCGATGTGGCACAGCATTTGGTTGATGaacacaaatttaaattaaacaacgAGGTTCATTTAGGATTGCATCCTTTCAATTTTAAACAGGATAAACTTATGTGCGGAATTTGCGATCTGAACTTTCCTTGTCTGAGGCAACTGAGTCGGCATATGGGAAgtcattttcaaaatttcacTTGTGATTCTTGTGGCAAATCTTACACCACAAACAGCTCTCTCCAACAGCATTTGCGCTTCTCACACAATGCCCAAGAACGAATTTGCAGGAAATGCAAGAAAACATTCAGTTCTTtagaagagaaaaaaaaacatatcgaaTCATCCCAAAAATGCTGGCATTATCAATGCAGTATATGTTTAGAACGATTTATTACATGGTCCAATAAAGAAGAACATTTAGTCCAAATTCATGGGCAGGAAAAAAAGGCGTACCCTTGTCGTGAATGCAAGTTGACTTTTGCCACGAGGAGCGTGTATAGAGCACATTTTAATACAACTCACGCTAATGTTGGGTTTGTATGCCCCCATTGTGAACGAAAGTTTGCATCCCAAAGATGTTTGGAGAACCATTTAGTGGTTCACATTGGAGAGAAGATATTTCATTGTTCGAATTGCTCTAAATCGTTTTATAGGAAGAAGAATCTTATACAACACTCTTGGATTCACAGTGAATATAAGAGGTTTGAATACGTGGGCCTACTGCCACATATACAGGCGAAGAGGAATGCAGAGGTTGTATTACAAAATACCACAGTGTACCCATTCAGACTGAGCGGAAAAGTTCTTATGTGCGTATATTGCTGCGAGGAATTTCCAGACCCAATAACATTCAGGACCCACTGCGATCTGGAACACCAAATCTTTACCATCTCAACAGCGTTCAGCCATATTTCTGTAAAAGACAATCTTAAAGTTGATTGCACTAATCTGAAGTGCAGGCTGTGCTCAAAACCTTTTGATACCATCGAAGAAGCAGCTGAACATCTCTTACAAGAACACAGTGGTAAGGACACCGAAAATCTGGATCTCAGCTCGGATATCGGCTTACAACCTTACAGGTTGATACCGGACAAATGGTACTGCTACTTGTGTAATAAAAAGATGCCTTCGTTAACCAAACTCTGCCGGCACACCACTTCCCATTATACACAGTACACTTGTGATATTTGCGCTCGCAGCTACCTTTCTATGGAGTCTTTAAAACACCATATGCGCTTCAGTCATTCGGGAAAGAATATGTGCCGAAAATGCTGGCAAGACTTCCCTACAACGGAAGAAAAGAGAAAACATATAAAGCTTACTAAGAAATGCTGGCCACTTACGTGCATTTATTGCCAAGAAAAATTCCTTTCTTGGGAATTGAAGGAGATGCATTTGGTTGAGGACCACGGACTTCCGAAGCAGACGTATCCTTGTCCTGATTGCACTGATGTCTTtgaaaagaggaaagatttttacaGCCATTATAAATTGACTCATACCGATGAAGCTTATATTTGCTCGTGTTGCAGCATGAAGTTTAGTTCGCTGAAGAAGTTGGAAGACCATAGAATTGTTCACACTGGTGAAAAGTTGTTTCAATGTAATGTTTGCTACAAACGTTTTACTCGCAAGAAGAGTCTTGCGCAACACATGTGGATTCATAGCGAGACAAAGAGATTTGTTTGTGTCATGTGCAATAGGCAATTTGCGCAAAAAATTAGCTTGAAAGGCCATATGAAGTCTCATCACCCTGATAAAGTTAATTTACAAATTTGA
- Protein Sequence
- MCVYCSENYSDPSIFRQHMKDEHKTFEVRNAFVHCAYEGYLKVDCTEISCRICEVYFEKITDVAQHLVDEHKFKLNNEVHLGLHPFNFKQDKLMCGICDLNFPCLRQLSRHMGSHFQNFTCDSCGKSYTTNSSLQQHLRFSHNAQERICRKCKKTFSSLEEKKKHIESSQKCWHYQCSICLERFITWSNKEEHLVQIHGQEKKAYPCRECKLTFATRSVYRAHFNTTHANVGFVCPHCERKFASQRCLENHLVVHIGEKIFHCSNCSKSFYRKKNLIQHSWIHSEYKRFEYVGLLPHIQAKRNAEVVLQNTTVYPFRLSGKVLMCVYCCEEFPDPITFRTHCDLEHQIFTISTAFSHISVKDNLKVDCTNLKCRLCSKPFDTIEEAAEHLLQEHSGKDTENLDLSSDIGLQPYRLIPDKWYCYLCNKKMPSLTKLCRHTTSHYTQYTCDICARSYLSMESLKHHMRFSHSGKNMCRKCWQDFPTTEEKRKHIKLTKKCWPLTCIYCQEKFLSWELKEMHLVEDHGLPKQTYPCPDCTDVFEKRKDFYSHYKLTHTDEAYICSCCSMKFSSLKKLEDHRIVHTGEKLFQCNVCYKRFTRKKSLAQHMWIHSETKRFVCVMCNRQFAQKISLKGHMKSHHPDKVNLQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -