Basic Information

Insect: Nycteola revayana
Gene Symbol: -
Assembly: GCA_947037095.2
Location: OX344853.2:2851126-2861565[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0004 0.038 15.4 0.9 1 23 18 41 18 41 0.98

2 9 0.0013 0.12 13.8 0.1 1 23 45 68 45 68 0.94

3 9 0.0075 0.7 11.4 0.1 3 20 86 103 85 109 0.92

4 9 0.00029 0.028 15.9 2.8 3 23 119 140 119 140 0.98

5 9 0.09 8.5 8.0 0.9 2 23 160 182 159 182 0.96

6 9 2.4e-06 0.00023 22.4 0.5 1 23 193 215 193 215 0.99

7 9 5.1e-07 4.8e-05 24.5 1.3 1 23 221 243 221 243 0.99

8 9 0.00076 0.071 14.6 3.1 1 23 249 271 249 271 0.98

9 9 2.6e-06 0.00025 22.3 0.3 1 23 277 300 277 300 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0004	0.038	15.4	0.9	1	23	18	41	18	41	0.98
2	9	0.0013	0.12	13.8	0.1	1	23	45	68	45	68	0.94
3	9	0.0075	0.7	11.4	0.1	3	20	86	103	85	109	0.92
4	9	0.00029	0.028	15.9	2.8	3	23	119	140	119	140	0.98
5	9	0.09	8.5	8.0	0.9	2	23	160	182	159	182	0.96
6	9	2.4e-06	0.00023	22.4	0.5	1	23	193	215	193	215	0.99
7	9	5.1e-07	4.8e-05	24.5	1.3	1	23	221	243	221	243	0.99
8	9	0.00076	0.071	14.6	3.1	1	23	249	271	249	271	0.98
9	9	2.6e-06	0.00025	22.3	0.3	1	23	277	300	277	300	0.98

Sequence Information

Coding Sequence: ATGAAGTGTACTCAAGCAAAGCAACATCAAGGTTGGCACAAAGGTGTtacttataaatgtaaatactgCGACGATATATTCACTGTATGGACGTCTTACATGAGTCATGTGCGAATCAAGCACCCGTCGGAATTCATCTGCGGCGTGTGTGGTTACTCGTTCATCAGCAAACTGGGACTGGCCATGCACAAGACTATGATGCACAAGGATGTTGTAGATAAATTAGAAGACATCAAAGAGGAAGACGGTCCTTATTGCGCTGAATGTGACGTCAAATTTATTTCCACTGAAGCATACAAACGGCATATGGTGATGTCTGTCAAGCACACCAGGACTACCGACTCTATTAAGGGTTGTCGCACATGCGGCGAGCAGTTCAAGAACTCGGAGGAGTTGCGGCTACATCACCGCAAGGAGCACGCCAGGAAGAGACCCAAGAACTACGGCAAGAAGCCCACCAACACGGCCTGGCCCACGCAGTGTCAGCACTGTTCAGAAGAGATCGCCAACGCCCGCGAGTATTGGACACACTTCAGACGAGTACACCCGGACAAGAACTACCCCATACAGAAGAACTACGTCTGTGATATATGTGGAAAGAGCTTTAGAGGCAACGCATTCCTAGTGTACCACAAGCGGACGCACTTCGAAGAGCGAGCGTACAAGTGTGGACAGTGCGACAAGGCGTTCTACAACCGAACCAACTTACAAGTGCACGAGAAAACGCACTCGGACACCCGGCCTTATCCCTGTACTGTCTGCTATAAGGCCTTCAAGTGTAAAGGAGCACTGACTCGCCATTTTAggAGTCACACGGGGCTGAAGCCGTACGAGTGCGAGGTGTGCGGCAAGGCGTTCAGTCAGTCCAACAGCCGCAAGCTGCACGTGCGCACCGTGCACCTCAAGCAGCCCGCGCCCTACGTCAGCCGCAGCCGCCAGGAGAGGAGGAACAAGCTCGCCAAGGAACAGACCACGAACCACTTCATCTATTAG
Protein Sequence: MKCTQAKQHQGWHKGVTYKCKYCDDIFTVWTSYMSHVRIKHPSEFICGVCGYSFISKLGLAMHKTMMHKDVVDKLEDIKEEDGPYCAECDVKFISTEAYKRHMVMSVKHTRTTDSIKGCRTCGEQFKNSEELRLHHRKEHARKRPKNYGKKPTNTAWPTQCQHCSEEIANAREYWTHFRRVHPDKNYPIQKNYVCDICGKSFRGNAFLVYHKRTHFEERAYKCGQCDKAFYNRTNLQVHEKTHSDTRPYPCTVCYKAFKCKGALTRHFRSHTGLKPYECEVCGKAFSQSNSRKLHVRTVHLKQPAPYVSRSRQERRNKLAKEQTTNHFIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -