Nrev010545.2
Basic Information
- Insect
- Nycteola revayana
- Gene Symbol
- -
- Assembly
- GCA_947037095.2
- Location
- OX344843.2:12940740-12947822[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00098 0.091 14.2 0.2 2 23 212 234 211 234 0.94 2 12 2.7 2.5e+02 3.4 0.3 6 23 244 261 242 261 0.92 3 12 0.0015 0.14 13.6 1.5 1 22 295 316 295 318 0.89 4 12 2.9 2.7e+02 3.3 0.3 5 23 327 345 326 345 0.94 5 12 0.0013 0.12 13.8 0.4 3 23 353 373 351 373 0.96 6 12 3.3e-05 0.0031 18.9 2.9 1 23 381 403 381 403 0.97 7 12 0.00096 0.089 14.2 2.0 1 23 412 435 412 435 0.97 8 12 0.00027 0.025 16.0 0.2 1 23 441 463 441 463 0.97 9 12 2e-06 0.00019 22.7 2.4 1 23 469 491 469 491 0.98 10 12 0.0013 0.13 13.8 1.0 1 23 496 518 496 518 0.98 11 12 3.6e-06 0.00034 21.9 4.2 1 23 524 546 524 546 0.97 12 12 0.00016 0.015 16.7 2.9 2 23 553 575 552 575 0.95
Sequence Information
- Coding Sequence
- ATGGCTATGACTATGGACGTGAAAGATTTGTGCAGACTATGTGCAAAAAAAGACGAGTTTTCTAAGGATTTGCTGGATGAGAGTAACaggaatgttttaaaattaatacaagaTTTCATACAAATCattGTATATGAAAATGATAACTTGCCTACAAAGATTTGTTTAAATTGCGAAGAAAAAATGGTTTCCTTTCAACTATTTATCTTAGAATGTTGTAAAGTCCAAGATACTTTGAAGAAACTTTATCAAGAGACATATGACACACTTCCAATAAAGATTGAAACCAGTCCCATTGTACTTGCAGCTCCTATTAAATCAGAGGTAAAAGATGAAGCAGATGTAACTGAAGATGATATAGtatGTGCCCTAAATAGCAATCCAACTTTGTCAGTGATTGATGCATACCCAGATAATGATGTATATGATGAAGATGATCATCATTtaggtgatgatgatgatgatgatgatgatgacgatgacgatGAATATCTGGATGATATAGCAATATCAATGTTGAAGCCATTAAAatccaaaataattaaaagaaaagaaataactGAAGAAGAAGCTGAAGAATTTAACCAAGTACTCAAAAAGTCGAATTTACAAGTAAAAGATTTtgttaaGTTGGAGTGCAATTATTGTGAAGAAAAACTGAAAACATGGAGTGGGTTACGTTTACATTATGCTAAAGAGCATAAAAGCAAACCATTTGTCTATTGTTTATGTGGTTTTGCAGTCAGATCTAAGAGTGTTCTTTACAAACATGTGTCAGATCATAAGCTTGAAAGCCGCAAGATGAAGAAAAATAATAGTGAAACAGATGATGAAAAACaagatgtcaaatattcaagtcTCAATGTCAAAGATTTTATTAgattcaTATGTTCAACGTGTGAAAAAGAATGCACGAGTTGGTATAGTCTAAAGGCGCACAGTGAGGAAACTCACAAAGTGTCGCCCGTAGTAACATGTGTTTGTGGGATCACTCTCAAGTCCAAATCCGTTATGTACAAACATGTACAGGATCATAGAAATCCTAATGTATTAGCttGTGACAAATGTCCTCGAATAACAAAAACGATATCTgccttaaataaacataaaatgagACATGTACCAAAGTCCGAGAGAAAATTCTGCTGTTCATcatgtgataaaatatttaattctaaagATGCATTGAAATCTCATGTGCGATCTCATATACCGATCGAGGATCGAAAAATATATCACTGTGAAATGTGCAATATGAAGTTCACAACCCGTTCGTCAGCGGCGTCTCACAAGCGAGTAGTACACGATAAGATCAAAGGCTACGTGTGTGACTTGTGCGGTTACGCTTGTGGCACAAATGGCGAGTTGCGTCAACACCGCGCCATCCACAGCGACGAGAAACCGTTCGTCTGTCGAACGTGCTCCAAACCATTTAAGACATATTCTAATTTGAAAACTCACATGGACACTCATGAAGAGACATCATATGAATGTTACATCTGTCGTCGCATACTCAACAGTCGACGTACTCTCCGCAAACATCTGTTAGTGCACGAAGACAAGTGCAGACATGTTTGCTCTTACTGCAACAAGGCGTTCAAAAGAAGGCAGACATTGAAGGTGCACATGTACACTCACACGGGCGACAAACCGCTGACATGCAAGTGGTGTGACGAGCGCTTTTCTTACGCGTCGACGTTGCGCTCGCACCGCCTGCGCTGTCACCCCGACAAGATGGCGGCGCACGCGCTCGACGCGTACCAGAACCATCCGCACATTAATGTTcaatatgattacataaataaagacGTGGCAGGTATAAGTGCATCCGTAGCGAAGAACGAAGTTGAGGCTATGTAA
- Protein Sequence
- MAMTMDVKDLCRLCAKKDEFSKDLLDESNRNVLKLIQDFIQIIVYENDNLPTKICLNCEEKMVSFQLFILECCKVQDTLKKLYQETYDTLPIKIETSPIVLAAPIKSEVKDEADVTEDDIVCALNSNPTLSVIDAYPDNDVYDEDDHHLGDDDDDDDDDDDDEYLDDIAISMLKPLKSKIIKRKEITEEEAEEFNQVLKKSNLQVKDFVKLECNYCEEKLKTWSGLRLHYAKEHKSKPFVYCLCGFAVRSKSVLYKHVSDHKLESRKMKKNNSETDDEKQDVKYSSLNVKDFIRFICSTCEKECTSWYSLKAHSEETHKVSPVVTCVCGITLKSKSVMYKHVQDHRNPNVLACDKCPRITKTISALNKHKMRHVPKSERKFCCSSCDKIFNSKDALKSHVRSHIPIEDRKIYHCEMCNMKFTTRSSAASHKRVVHDKIKGYVCDLCGYACGTNGELRQHRAIHSDEKPFVCRTCSKPFKTYSNLKTHMDTHEETSYECYICRRILNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCDERFSYASTLRSHRLRCHPDKMAAHALDAYQNHPHINVQYDYINKDVAGISASVAKNEVEAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029509;
- 90% Identity
- -
- 80% Identity
- -