Nrev004608.1
Basic Information
- Insect
- Nycteola revayana
- Gene Symbol
- -
- Assembly
- GCA_947037095.2
- Location
- OX344840.2:3408517-3419298[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.043 4 9.1 1.7 1 15 194 208 194 213 0.87 2 11 0.055 5.2 8.7 2.1 1 23 224 246 224 246 0.98 3 11 1.2e-05 0.0011 20.3 2.1 1 23 259 281 259 281 0.97 4 11 1.6e-06 0.00015 23.0 0.9 1 23 287 309 287 309 0.97 5 11 4.5e-05 0.0042 18.4 4.0 1 23 315 337 315 337 0.98 6 11 4.8e-05 0.0045 18.3 3.8 1 23 343 365 343 365 0.98 7 11 0.00028 0.026 15.9 1.2 1 23 371 394 371 394 0.93 8 11 5.8e-05 0.0054 18.1 1.8 1 23 400 423 400 423 0.92 9 11 4.8e-05 0.0045 18.3 3.8 1 23 458 480 458 480 0.98 10 11 0.00028 0.026 15.9 1.2 1 23 486 509 486 509 0.93 11 11 5.8e-05 0.0054 18.1 1.8 1 23 515 538 515 538 0.92
Sequence Information
- Coding Sequence
- ATGCATTGGCGAGAAATCGATgttaaaaacaatgaattgtacACTTATGAATATTTCAAAGACTCCGATATTTGTCGATTGTGCTGGAACAAAAATgctaataaagaaatttatgCAAAATATTCAGAAATAGTACTCGAAAATCTTATAGCAGATATCATGAAGACTTTTCTAGAAATAGATGTttataaaacacatttaaatatGGTTTGCGAGCAGTGTTCAAACGAAATCCAAAGAATAATTGAATTCAAAACGTTTTGTCAAGCAAATGATAAGAGATTGCATGATATTCTTACTAACATTCCTACAAATGCTATTAAAATCGATGATGATATGGCAGATGTTGATATGAAAATGGAAAATGAACAGATAACTGATGATATATTCGATGAAGAAAACAATATTACTGAGGAAATTagcaaaattataacaaaaacaaaacctaAAGTACGAAAAAAGTGTAATATCAAAAATTTACCCACATTTTGTAAGATATGCTCCTTAAATTTGGAAAGTACGGAAACATTATCACTCCATAATGCTGAATTGCATGGTATAGAAAATGATGGTACATTATTCAAATGTTTTGGATGTAAAAAGcgatttaaaagtaaaaaggcTCGACTAGGACATGAAGTTAACTTCtgtaatggtttaaaaaatggttataaatgtgaaatttGTGAGAGATTTTTACCCAAACGTTGTGTTTATGAATCACACATGAGAGATCACACGCATAATGTGTGTACGGAGTTGCCCGAGTTATTGTTTAAGTGTGGAAAGTGTAAGGAGCGGTTTAAAACTAATGAAATGTTGAAAAGACATTTGCTCGAACATGGAAAGCAGAGGAATTATATTTGTGATGTGTGTGGACGAGTATTTACACGACGCGACTACTTATACAAGCACAAGTTGATGCACGACGGTGTGAAGCAGCATCAGTGTCCCCACTGCGACTTCAAAGCCACTCAAAGATCGTCTTTAACTGTACATATCAGGAAACATACAGGGGAACGTCCGTACAGTTGCGACTTATGTCCACAGCGCTGCGTGTCCAGCTCCAACCTGCGAGCGCATCACAGGAGACACCTCGGAGAGAAGAAATATGAGTGCAACATCTGTCACAAAAGATTTGGATACAAACTAAGTCTAGAAGAGCACATAACAGGAACTCACGTCCTCTCCGAGTCACATCCGTGTGAACACTGCGGCGCCACGTACACGAGGAAACGTGGCTTACggcgccatctagcggcgaaACACGGGAAACTCGCGAAACAACCGCCAATTCAAAATGagaacgataaaaaaatcgaAGATTTAAAGGAAACGGAAATGATTGAGAAACATACAGGGGAACGTCCGTACAGTTGCGACTTATGTCCACAGCGCTGCGTGTCCAGCTCCAACCTGCGAGCGCATCACAGGAGACACCTCGGAGAGAAGAAATATGAGTGCAACATCTGTCACAAAAGATTTGGATACAAACTAAGTCTAGAAGAGCACATAACAGGAACTCACGTCCTCTCCGAGTCACATCCGTGTGAACACTGCGGCGCCACGTACACGAGGAAACGTGGCTTACggcgccatctagcggcgaaACACGGGAAACTCGCGAAACAACCGCCAATTCAAAATGagaacgataaaaaaatcgaAGATTTAAAGGAAACGGAAATGATTGAGTACGAATTGAAGAATGAGAATGTTTTGTTGTTGAAACATCAGGATGGGAGCGTTTATTTGGTTTGA
- Protein Sequence
- MHWREIDVKNNELYTYEYFKDSDICRLCWNKNANKEIYAKYSEIVLENLIADIMKTFLEIDVYKTHLNMVCEQCSNEIQRIIEFKTFCQANDKRLHDILTNIPTNAIKIDDDMADVDMKMENEQITDDIFDEENNITEEISKIITKTKPKVRKKCNIKNLPTFCKICSLNLESTETLSLHNAELHGIENDGTLFKCFGCKKRFKSKKARLGHEVNFCNGLKNGYKCEICERFLPKRCVYESHMRDHTHNVCTELPELLFKCGKCKERFKTNEMLKRHLLEHGKQRNYICDVCGRVFTRRDYLYKHKLMHDGVKQHQCPHCDFKATQRSSLTVHIRKHTGERPYSCDLCPQRCVSSSNLRAHHRRHLGEKKYECNICHKRFGYKLSLEEHITGTHVLSESHPCEHCGATYTRKRGLRRHLAAKHGKLAKQPPIQNENDKKIEDLKETEMIEKHTGERPYSCDLCPQRCVSSSNLRAHHRRHLGEKKYECNICHKRFGYKLSLEEHITGTHVLSESHPCEHCGATYTRKRGLRRHLAAKHGKLAKQPPIQNENDKKIEDLKETEMIEYELKNENVLLLKHQDGSVYLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -