Basic Information

Insect: Nycteola revayana
Gene Symbol: -
Assembly: GCA_947037095.2
Location: OX344850.2:8728061-8749680[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.033 3.1 9.4 0.6 6 20 12 26 6 28 0.86

2 13 4.7 4.4e+02 2.6 0.1 2 20 34 52 33 54 0.91

3 13 0.77 72 5.1 0.4 1 12 195 206 195 215 0.86

4 13 0.058 5.4 8.6 0.4 1 19 306 324 306 324 0.98

5 13 1.5e-05 0.0014 19.9 0.4 1 23 331 353 331 353 0.99

6 13 7.9e-06 0.00074 20.8 0.7 1 23 368 390 368 390 0.99

7 13 3.1e-05 0.0029 18.9 0.3 3 23 444 464 442 464 0.97

8 13 0.015 1.4 10.4 2.0 1 23 480 502 480 502 0.96

9 13 1.5e-05 0.0014 19.9 7.2 1 23 508 530 508 530 0.97

10 13 0.00036 0.033 15.6 3.4 1 23 536 558 536 558 0.97

11 13 2e-06 0.00018 22.7 0.4 1 23 564 586 564 586 0.98

12 13 0.00044 0.041 15.3 1.1 1 23 590 612 590 612 0.98

13 13 0.0024 0.23 13.0 0.1 1 23 620 643 620 643 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.033	3.1	9.4	0.6	6	20	12	26	6	28	0.86
2	13	4.7	4.4e+02	2.6	0.1	2	20	34	52	33	54	0.91
3	13	0.77	72	5.1	0.4	1	12	195	206	195	215	0.86
4	13	0.058	5.4	8.6	0.4	1	19	306	324	306	324	0.98
5	13	1.5e-05	0.0014	19.9	0.4	1	23	331	353	331	353	0.99
6	13	7.9e-06	0.00074	20.8	0.7	1	23	368	390	368	390	0.99
7	13	3.1e-05	0.0029	18.9	0.3	3	23	444	464	442	464	0.97
8	13	0.015	1.4	10.4	2.0	1	23	480	502	480	502	0.96
9	13	1.5e-05	0.0014	19.9	7.2	1	23	508	530	508	530	0.97
10	13	0.00036	0.033	15.6	3.4	1	23	536	558	536	558	0.97
11	13	2e-06	0.00018	22.7	0.4	1	23	564	586	564	586	0.98
12	13	0.00044	0.041	15.3	1.1	1	23	590	612	590	612	0.98
13	13	0.0024	0.23	13.0	0.1	1	23	620	643	620	643	0.95

Sequence Information

Coding Sequence: atggGGGGACCAGCATTAAATTGTCCTCTTTGTTGTGATAAAACTTTTAATTCTAAACAGTCTCTAATAGACCATTTAACCTTAGTGGTCGAAAATTTGTACTGTCCTGTTTGTGCTGTAAGATGCGCATCTATAATACAGCTCACGGAACATCTAACCCTCGAGAATTGTCAGGCGAATACTTCTATAGGCACTGTAGTATTTTACGAAAATGGCTCACAAGAAAATTCTTTAAAAGGTTCAGCAGGTCATAATGCTAAAGTATTACAGAATGGTACAACATTCACAACAACAGACCAGACTTATGAAACTGTGGATGGTGATgttaacaaaatgtatgcagaGATACTTAGCAAGCAGCTGTCCAAGCCAAATATACAAATGCAGGAACTGAAACTGGTGAAAGAAAATGGAGAGAGTGAATACATGATTCTTACTCAAGATAGTATGGATGGATCTACTATAGTGACCAAACAAAATAACGATGGCACTATATCACTGACATCAGTCAAtgACATGAAAATTGAGACAGATGCAACAATCGCCCCAGAAGCAGAGGCTGAGGAAAACAGGGAGGAGATCTACAGCTGCAACACCTGTAAAGTTTCATTTTCCTCAGTCTTGGAACACATTCAGAACTACCATAATGATCAGGATGTTGTGGTGGagGAACCTATAACAGAGAATGAAAATGATCCACTCTTAGAATATGATACAGTTGACAATGATGATCCACTGCTGACTAGTGACAAGCAGGCACGTCGTGTGATTACTGAAACAGGAGATATTGTGGAAGAGCCATTAATTTTTAAAGCGGATATGGCACAACAGAAGGATAGCGATAAGAGTGGCGGTCCTTACCACAAAGTTGTAGTATCAGAAGTGCAAACGGATTCAGGATTTGCAATCAAAATGTATCAATGTATGATATGTAACATTTGTGTGAGCAACTTGAATGAGTTTAAAGCACATCCTTGTAAAAACATGAAGTATACGTGTCCGAATTGTCCTGCGGCGTACGAAAATTCCAAATCTCTTTGTGCGCACATGAAAGTGCACAAAGTAAGATCAAatAGTCCAAATGCAAATTTACCTATGTCATATGAATGCGAGATTTGTAGTACTGTATTCCCTACAAACAAGTCATTGAAACTGCACAAACGGATGCATTTTCCTATcaaAGCTCGCCCCATTGACCCACCCATAGAAACCAATGAAGGCAACGTAGGTAGTGAAGACCGCTTCCTCTGTACAGTGTGTGACAAAATGATCCCCGAAGACTATCGCTCTATACACCAAGCCTCGCACAAGACGAGTGACAAAATGATCTGCAgtgtttgtaataaaaagttCACGTCTGTGGAATATCTggaaatgcatatgaatgtacatAATATGGAAAAGGCGCCGATAAGCAAGCAAGATAAGGCACACCCATACAGCTGTATATACTGCAACAGAAGATTCGCTAGACCACACGAAAAAGTCAAACATGAAAGAATACATACAGGTGAGAAGCCCCATTGCTGCGAGATCTGTGGCAAGTCGTTCCGCGTGTCCTACTGTCTCACTCTGCACATGCGCACGCACACGGGAGCCAGACCTTATGCTTGCAATATTTGTGGAAAGAGGTTCAAAGCGCACAGCGTATACAACCACCACTTGCTAACGCATTCCGAAGTACGCGCGTACAAGTGTCCCTATTGTCCGAAAGCATTCAAGACTTCCGTACAACTGGCGGGACATAAGAACTCCCATACGAAGCCGTTCTCTTGCCAACATTGTAacagGCCATTCGCATCTCTCTACGCAGTGCGAGTCCATACAGAAACGCATTTGCGACAGAATAACCTGAAGTTCTCGTGCGTTCTATGTGGAGCAAGCTATGCTAGAGCATTCGCGTTAAAGGACCACGTCAAACAAGTGCACAATAAAGATGTCGACACTGTCAATGATACTAGTTTGAGTAAAGACGACGACTGGGCAGCGAATGAGAATACAGACTCGGATGGAATACATCCACTCAGCAAGGATTTGCAGCAAGACATTGACTTGGGAATGAATGCCAACGAACTCATAGTTCCTTAA
Protein Sequence: MGGPALNCPLCCDKTFNSKQSLIDHLTLVVENLYCPVCAVRCASIIQLTEHLTLENCQANTSIGTVVFYENGSQENSLKGSAGHNAKVLQNGTTFTTTDQTYETVDGDVNKMYAEILSKQLSKPNIQMQELKLVKENGESEYMILTQDSMDGSTIVTKQNNDGTISLTSVNDMKIETDATIAPEAEAEENREEIYSCNTCKVSFSSVLEHIQNYHNDQDVVVEEPITENENDPLLEYDTVDNDDPLLTSDKQARRVITETGDIVEEPLIFKADMAQQKDSDKSGGPYHKVVVSEVQTDSGFAIKMYQCMICNICVSNLNEFKAHPCKNMKYTCPNCPAAYENSKSLCAHMKVHKVRSNSPNANLPMSYECEICSTVFPTNKSLKLHKRMHFPIKARPIDPPIETNEGNVGSEDRFLCTVCDKMIPEDYRSIHQASHKTSDKMICSVCNKKFTSVEYLEMHMNVHNMEKAPISKQDKAHPYSCIYCNRRFARPHEKVKHERIHTGEKPHCCEICGKSFRVSYCLTLHMRTHTGARPYACNICGKRFKAHSVYNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRVHTETHLRQNNLKFSCVLCGASYARAFALKDHVKQVHNKDVDTVNDTSLSKDDDWAANENTDSDGIHPLSKDLQQDIDLGMNANELIVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -