Nrev019473.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nycteola revayana
Gene Symbol
ham
Assembly
GCA_947037095.2
Location
OX344850.2:8955316-8994383[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 5.4 5.1e+02 2.4 0.2 2 23 252 274 252 274 0.88
2 9 0.0039 0.36 12.3 2.4 1 23 281 304 281 304 0.93
3 9 2.2e-08 2.1e-06 28.8 0.1 1 23 310 333 310 333 0.96
4 9 1.9e-06 0.00018 22.8 1.7 1 23 339 361 339 361 0.95
5 9 6.7e-05 0.0063 17.9 6.1 1 23 367 389 367 389 0.99
6 9 0.00014 0.013 16.9 0.4 2 21 397 416 396 417 0.94
7 9 1.6e-08 1.5e-06 29.3 0.7 1 23 806 828 806 828 0.98
8 9 5.8e-07 5.4e-05 24.4 1.7 1 23 834 857 834 857 0.97
9 9 2.2e-05 0.002 19.4 3.2 1 23 863 885 863 885 0.98

Sequence Information

Coding Sequence
ATGCGGGGTGGCCCGGGCGAGGCAGCAGACAGCCAGGAGTCTGGCAGCCCACCACCAAGTCCCACTGACTCTGCCACATCAGAACCACCGCCCACCCTAGTTCACATTAAGCAGGAGGCCATGCCCCCCGGCACAGATCTCAAAGAATACTACGGAGGTTTAGACTTCAGTATTTCCGACACATATCTTTCTTCAAACTTCCAAGATTATAGAAACTATTTACCACGTCCATTAGACTTGCAAAACTCAAACTATTCCTCAAAAGATTCGAAAGATAAAGAGGATGTATTCAAAGATGATCCTACAGAGGATATAGACTTTAAATTACCAATTGAATTGATATTCAAAAATGGCGGTATATTTGCAAGGAGTAATATTGCTAGTGGGACAGAGTATGGGCCGTTCCTTGGGAAATGGGAGACGCATCCGTTGGATAGAAAATTCGCTTGGGAGGTTCTCGGCAAGAATGGCGTCCGGGGATGGTTGGATGGCACCACAGAACGTACGAATTGGTTGAAGCTGGTACGATCCAGTAACTACCCTCAAGACGTAAATGTGCAGCATTTATTGCTCGCAGGCCAAGTTTGGTACAAAGTGATCCGTGAAATATCGCCGGGAACGGAGCTGATGCTAGGTCCTAGGACTCCACTGCCACTTCAAGATGTTACTACTGCGCCTGaACATCCAGCTGTACTAGAGAAGTTCAACGCACTGCCTTCAGCTGAAGACGAGGAGCGAGAAGACGCAGACCCTCGGTGCTCCTTCTGTGAAGCACCTTTCCCTAATATTGACGTTCTCGATCACCATTTGGTTCAGGAGCACGCGCAACCAGCTGCTAGGTTCCACTGCGAGCTGTGCAACAGAGCGTACAGTACCCATACATTGTTGCTTCGACACCGTGCGCTTGCGCATACAGACATCAGAAAATATCCCTGCGAAAACTGTCCTAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATCCGTGCTACTCACGTGGGGGCGCGCAGTCACGCCTGTCCCGAGTGCGGGAAGACCTTCGCCACCTCCTCCGGCCTCAAGCAGCACACCCACATCCACTCCAGCGTCAAGCCGTTCCAGTGCAAGGTCTGCTTTAAGGCATACACCCAATTCTCGAACCTGTGCCGTCACAAGCGAATGCACAGTGCTTGCAGAGCGCTTGTTGAATGCGGCAAATGCGGACAGTCTTTTACATCATACGCATCTCTTACCAAGCATAAACGCTTCTGTGACACAGCCTCAGCCTCAGTGTTGCGCGGGCAAATGCCTCCAGGTCTGCCGCCACTACCAAACGTCCCAATGAATTCTTCAAACAATACGAACCCATTCCCACTATACAGAGGGCCTCTGTCACTGCCTTACAATACATTTGCTCACTACCCGGCTTTTCTCTCGGCTGCTGCCGCAGCATGTCCTCCGGAGTTTCTCAACCCACTGCTCTTCAATGTCCAAGGCGCTCGACTCGCTATGGAGCACGATATTGCAATGTCAAACGCAAGCTTAGCGTCGAAACAACAGGAGGGTCGACTTTCCGTAAAGAGCATGGATAGTTCCAATTCCATGGATGATACAAAGAAATCTAAAGATTTGGAATTTGACAAAAAACGAGATAGTTACAGCTCGGAAAGAGCGACGCCGAATAAGGCGCACAGCTTTTATGGAAAACAATCACCACCATCGGCCGAAGAAGCGTCCTCCCAACGACGACCTTCACCAGTGATGCCAATGTCCACGCCAATTGCGCCGTTCAATTtccaaaaagaagaaataaagaGGATTCCTTTCAATTTCTCCCACAAGCTCAATATTGACGATATTCAAACGACCAAGTCTGAATCTCCATTACCAACAAATCTATCCAAAAATGCGACAAATGATGACAAAACTTCTGAGTATTCCGACATGGAGGAAGATACAAAAAAAGATGAGAGCGATCAGCCTTTGGATCTGTCCGTAGGTAGGAAGCAAAGTGACAAAGAATCAGAGGCGGAAAACGACGACCGTTCTATTCGTAACTCCATCAAGTCATATTCACCGCCAGAGAGCCCCATTGAAAGGAGTAAAACCCCAGAGAACGAAACCATAGATGTGGATGTAGAAGGCGTTGAGCCAAAGAGGGAAGAATCCCCACAGCAAATAGTGTCGCCATCTCTCGCATTTCCAATGCCCGTTCATCCTCAGCACAGTAACCTAATCGATGCGATGTATCGCCCCCGATTTCCTTCCTTTCATTCTTCGGAATCCATTTTGAACCCATCTCATTCACCATACGTCCCTAGCCCATTCAATTTTTTATCCCCACTTCTCGGTACTGATGGACCAGATAGGCAACCCAGCGCGTACGCCAAGTTCCAAGAGCTCAGCGCGGGATCTGGAAAGATGCGGGATAGATATGCCTGCAAATTCTGCGGAAAGGTGTTCCCTCGTAGCGCTAACCTGACCCGTCATTTGCGCACACATACAGGAGAGCAGCCGTATAAGTGTAAATATTGCGAGCGCTCGTTTTCCATTTCGTCCAACTTGCAAAGACACGTGCGGAACATACACAACAAAGAGCGCCCGTTTAGATGTCCGTTGTGCGAACGATGCTTCGGGCAGCAAACGAACCTGGATCGTCACTTGAAGAAGCACGAAGCTGAAGGAGGTGATTCGCCGAGTTCGGCGGACACGGAGCGCGAGGACGCGTACTTTGATGATATTCGCTCGTTCATGGGGAAGGTGACGTGTTCGCCGGGCACACGCTCGCCGGCGCCTCCGAGCCCGCACCCTGCTCGCGGCGCGCTGGCGGTGTCCACATAG
Protein Sequence
MRGGPGEAADSQESGSPPPSPTDSATSEPPPTLVHIKQEAMPPGTDLKEYYGGLDFSISDTYLSSNFQDYRNYLPRPLDLQNSNYSSKDSKDKEDVFKDDPTEDIDFKLPIELIFKNGGIFARSNIASGTEYGPFLGKWETHPLDRKFAWEVLGKNGVRGWLDGTTERTNWLKLVRSSNYPQDVNVQHLLLAGQVWYKVIREISPGTELMLGPRTPLPLQDVTTAPEHPAVLEKFNALPSAEDEEREDADPRCSFCEAPFPNIDVLDHHLVQEHAQPAARFHCELCNRAYSTHTLLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRATHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHSACRALVECGKCGQSFTSYASLTKHKRFCDTASASVLRGQMPPGLPPLPNVPMNSSNNTNPFPLYRGPLSLPYNTFAHYPAFLSAAAAACPPEFLNPLLFNVQGARLAMEHDIAMSNASLASKQQEGRLSVKSMDSSNSMDDTKKSKDLEFDKKRDSYSSERATPNKAHSFYGKQSPPSAEEASSQRRPSPVMPMSTPIAPFNFQKEEIKRIPFNFSHKLNIDDIQTTKSESPLPTNLSKNATNDDKTSEYSDMEEDTKKDESDQPLDLSVGRKQSDKESEAENDDRSIRNSIKSYSPPESPIERSKTPENETIDVDVEGVEPKREESPQQIVSPSLAFPMPVHPQHSNLIDAMYRPRFPSFHSSESILNPSHSPYVPSPFNFLSPLLGTDGPDRQPSAYAKFQELSAGSGKMRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCERCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPGTRSPAPPSPHPARGALAVST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00441779;
90% Identity
-
80% Identity
-