Nrev005357.1
Basic Information
- Insect
- Nycteola revayana
- Gene Symbol
- -
- Assembly
- GCA_947037095.2
- Location
- OX344840.2:7212962-7220425[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.068 6.3 8.4 0.1 2 23 105 127 104 127 0.94 2 18 0.17 16 7.2 0.7 2 23 150 171 149 171 0.97 3 18 0.00013 0.013 16.9 0.5 1 23 175 197 175 197 0.97 4 18 0.0051 0.48 12.0 3.5 1 23 202 225 202 225 0.95 5 18 6.8e-05 0.0064 17.8 1.3 2 23 233 255 232 255 0.97 6 18 3.4e-05 0.0032 18.8 1.9 2 23 263 285 262 285 0.95 7 18 8.3e-05 0.0078 17.6 2.8 1 23 291 313 291 313 0.97 8 18 9.6e-06 0.0009 20.5 2.0 1 23 319 341 319 341 0.99 9 18 0.011 1 10.9 0.1 1 23 457 480 457 480 0.93 10 18 0.024 2.2 9.9 0.1 2 23 507 529 506 529 0.95 11 18 0.16 15 7.2 1.1 3 23 553 573 551 573 0.87 12 18 5 4.7e+02 2.5 0.0 1 12 577 588 577 592 0.88 13 18 0.012 1.1 10.8 3.4 1 23 604 627 604 627 0.96 14 18 0.32 30 6.3 1.5 2 23 635 657 634 657 0.84 15 18 7.8e-05 0.0073 17.7 1.9 2 23 665 687 664 687 0.96 16 18 0.0064 0.6 11.7 2.2 1 23 693 715 693 715 0.97 17 18 7.1e-06 0.00066 20.9 1.9 1 23 721 743 721 743 0.99 18 18 0.00018 0.017 16.5 4.3 1 23 749 772 749 772 0.97
Sequence Information
- Coding Sequence
- ATGGAGAAACTGTCTACAGAGACAATTTTATCGAAAATTATGCTTATTGGACCGAAATCATGGAATATCGAAGAAAGAGAAATTGATAAACACCTGACTAATATAAGAACTATTCTATTACATTCGAATGCTACACCTATTAAATGTTACAATGGTATAGGATACTCTTGCTGTTTTTGCAAAGAAAATCATCCGGTACCCAAAGATTTGAAAAGTCATACTTTGCAAAACCACGATGAATCAGAATTTAAAGCGTTTATGAATGGAGCCATCATTACTCATTATGTAGTCAAACTTGACATCACAGATTTGACATGTAAAATTTGTGATGCTAATATTGATACCGTTGAGAACCTGACAGAACATTTAAAagataatcataataaattgaTGTACACCGATATAAAGAGCCATATTCTTCCGTTCAAATTTGGTTCTGCTGAATTAAAATGTGCAGTTTGTTCAATGAACTTCGTGACTTTTAAAATTATGCAAGAACATATGCGGAAACATTATGGCAACCATATGTGTCCAATATGTGATGCtccatttattaataaaagaacaCTTTTGAGTCACCTATCTCGGCATAAACAAGGAGAATTTGCTTGCACTTATTGTGATAAAAAGTTTGACACTCAAATCAAGCAACGTCATCACGAACGCTACGTTCACATTAAAGGCCATATGCGAAATAAATGTCCATATTGCGGCGAGAAATTCTCtagttatttcaataaaaatcagCATATGCTAAAAGAGCACGGTGTTCAACCTACAGTTTTGAAGTGTATGGCTTGCGATAAGACGTTTACGCGGAGAGATCTTTTGACAAAGCATACGAAGCGAGATCATCTGTTGGAAAGGAAACACGAATGCGATCTTTGCGATAAAAAGTTCTTTGGAAGTAAAGAACTGAAAAATCATATGTTAAAACACACTGGAGAACGGGAATACAAATGTGATATTTGTTCTAAAGCCTATGGCAGAAAACATACTTTAAGAGAACATTTAAGAATACATGCAGATGATAGACGATTTAAATGTGGGGGCACGTCAAATGCTGCCGCTTTGAAATTACTACGCAACCTCAAAGATGTAAGGGTTACTCCAAAGAgagatgttaaaataaaacgagATGCAACCGCGgctaaaattattaaagttattaacaTCAAATCTAATACTACCAACGATAAAGGTGTTCGACTTAACAACGCAAAGAACGAACCGGATATTGAAAAACTAGCGAAACGCTCACTACTCCACAAAGTTTCATCATCTGAGTTAGAAAAACATCGCAGTAACATACGACATATACTCCAATACTCAAATGCCACGCCTATACGATGTCGAGGCGGTATTGGATACGCTTGCTCCTTTTGTGGAAACGAATATCCCGACCCAGCAGACCTAAAAATACACACGACACAATCCCACGAAGAGAAATCGATACTTAAATTCATGACTGGCCAGGGGATGGGGTCGTATCTAGTCAAGTTAGACATTACTAATCTTTCCTGTAAAATTTGCTTAGAATCAGTCGATTCTCTGGAAAACCTTACAGATCATCTCATAAAAAATCACAATATAACTATCTTTACTGATATAAAAAGTCATATCATGCCTTTTAAGTTTGATGATGAAGTGTTAAGGTGCATTTATTGTATGaatgtattcaataaatttaaaaatctccAACAGCATATGAACGTCCACTTTCGGAATTATATCTGTACCGTTTGCGATGCTGGGTTCATCAACACTCACATTCTAGCCTGCCACTCAGAAGGGCATAAAATTGGCATTTTCAAATGCGACTTATGTCCTAAAGTTTTCGATACACATAGAAAGAAGAAGTCACATGAAAAGTCTGTCCATATTCACGCGAGCATGCTGAGCAAATGTGGTTATTGTAATCAAAAGTTTACGAATTACAGAAAGAAGGATGAACATTTAGTTAAAGTGCATGGTGTTCACATGAATGCGATTAAATGTCATGCTTGTGAAAAGACTTTTGACACTAAAAGTGCGTTGACTATACATACTAAGAGGGATCATTTAATGGAAAGGCGGCATAAGTGTGAGCAATGTGAAATGAGGTTTTTCGGGTCGAATGAATTGAAATTGCATATGGTGAAACACACTGGATCGAAGGAGTTCAAATGTGATGTGTGTTTTAAGTCATATGGAAGAAAGAAAACGTTGACGGAACATATGCGAATTCACAATGATGATAGGAGATTCAAATGTGAACATTGTGGACAAGCTTTCGTTCAAAAATGTAGCTGGAAAGGACATATGAGGAACAGACATGGAGAAATGATCTGA
- Protein Sequence
- MEKLSTETILSKIMLIGPKSWNIEEREIDKHLTNIRTILLHSNATPIKCYNGIGYSCCFCKENHPVPKDLKSHTLQNHDESEFKAFMNGAIITHYVVKLDITDLTCKICDANIDTVENLTEHLKDNHNKLMYTDIKSHILPFKFGSAELKCAVCSMNFVTFKIMQEHMRKHYGNHMCPICDAPFINKRTLLSHLSRHKQGEFACTYCDKKFDTQIKQRHHERYVHIKGHMRNKCPYCGEKFSSYFNKNQHMLKEHGVQPTVLKCMACDKTFTRRDLLTKHTKRDHLLERKHECDLCDKKFFGSKELKNHMLKHTGEREYKCDICSKAYGRKHTLREHLRIHADDRRFKCGGTSNAAALKLLRNLKDVRVTPKRDVKIKRDATAAKIIKVINIKSNTTNDKGVRLNNAKNEPDIEKLAKRSLLHKVSSSELEKHRSNIRHILQYSNATPIRCRGGIGYACSFCGNEYPDPADLKIHTTQSHEEKSILKFMTGQGMGSYLVKLDITNLSCKICLESVDSLENLTDHLIKNHNITIFTDIKSHIMPFKFDDEVLRCIYCMNVFNKFKNLQQHMNVHFRNYICTVCDAGFINTHILACHSEGHKIGIFKCDLCPKVFDTHRKKKSHEKSVHIHASMLSKCGYCNQKFTNYRKKDEHLVKVHGVHMNAIKCHACEKTFDTKSALTIHTKRDHLMERRHKCEQCEMRFFGSNELKLHMVKHTGSKEFKCDVCFKSYGRKKTLTEHMRIHNDDRRFKCEHCGQAFVQKCSWKGHMRNRHGEMI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -