Nrev028870.1
Basic Information
- Insect
- Nycteola revayana
- Gene Symbol
- -
- Assembly
- GCA_947037095.2
- Location
- OX344860.2:2149068-2152987[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.3 2.2e+02 3.6 0.4 5 20 223 238 221 240 0.90 2 12 0.00015 0.014 16.8 0.1 2 23 267 289 266 289 0.96 3 12 8.6e-06 0.00081 20.7 4.6 1 23 308 330 308 330 0.98 4 12 0.0019 0.18 13.3 2.9 1 23 338 361 338 361 0.95 5 12 0.0078 0.73 11.4 0.0 2 19 368 385 367 387 0.93 6 12 0.00027 0.025 16.0 4.0 1 23 395 417 395 417 0.98 7 12 3.7e-07 3.4e-05 25.0 1.0 1 23 423 445 423 445 0.96 8 12 4.1e-06 0.00038 21.7 0.8 1 23 451 473 451 473 0.98 9 12 2.1e-06 0.0002 22.6 0.2 1 23 479 501 479 501 0.98 10 12 0.00068 0.064 14.7 0.2 1 23 507 529 507 529 0.96 11 12 7.1e-05 0.0066 17.8 2.9 1 21 535 555 535 557 0.96 12 12 1.2e-06 0.00011 23.4 0.7 1 23 563 585 563 585 0.98
Sequence Information
- Coding Sequence
- atgGACATTACAGtagaaatatttgataaaatatgccGTGTATGTTTAACACAAGCATCACAGAAGAAATCTCTATTTATGAAGCAAGATGGGGAAGAAAGaaatttgtttgatattttatcatttactgCGAATATAAACGTTAAATTAGACGACAGCTTACCGAAACAGGTTTGTGTTGAGTGCGAGACTTTAATGTATAAAGCAGATGCATTTAAAAGGCGTTGCCTTGAGTCTGAAACATTATTAAACAACATTTGGCAAAACTCTGTAGGGGACGATAAAAAACTGCCACAAGTCGGTGTAAAATTAACTATAAAGCGCGAACAGAATGATTTAGACGATAATTTTGATCATTTACATAGTTTTAATCATGCAGATCCTACGAGTTCTCATTATGAGGAAGGCTATGACAAAAACAATGTGTTAAAGGGATTAGCGGTTTGTTCTATTGTTGACGCCAGTTGTGATACTGACACTAAGAGTGTTATACCTCTGACATATCCACAACCCGGCAAGCAAGAAGCTGAGGACGACTTTGAGGATGATCACCATGATTACGACGAGTTTCCCATAGATTTTAATAACACCCAAACCTTTGAGACGGTACCTTTAGAATTTTCCCCCGAGAAACCtatcaaaagtgaaaataaagtttacaaatGTATCTGCGGACTTCAATTCACAAATGAAGTCAAATATAAATCACATTCCAAACAAAAATTGTGCTTCAAATACAAGAGAATATTTGAAAAGTTAGGTAAAATTGATGATATCAtacatttgaataataaattaaaatgtgcaGAATGTGATCTCGAATTTAACAATCCTAATAAATTAATAGCTCATCAGAGATTGCAACACAAGAAACCTATACAGTCCAAAAAATTaccgataataattaaaaaagatgaAGTTCACCAATGTTCATTGTGTCCTCGCAAATTTACATCTAAAAAACTTCTCAACAAACATATCAAAAGACACCCCAGTATGGACAACAGACGTCATGAGTGCGACATATGCAAACGAGTATTCAAATATAAAGCGTTTCTAGACAAACATAAAGTTACACGACATTCTAAAAGCAACAATCTTGTTTGTCCAATATGTCTACAGACATTCACGAGCGAGGAAATGTTAAAAGAACATAAAGATTGTCAGAAAGACGATAAGAAACATCAATGTAATATTTGTCAGAGGGCGTTTGGTATGTTGTGCACATTAAAAGAACATATGAGAACACACACAGgagaaaagccgtttttatgtTCAGAATGTGGGAAAGGCTTCAGTCAGAAAACGAACCTGGGGCAACACATGAGACGGCATCAGGGGTTGAAGCCATTTAAATGCGAAAATTGTGAGAAAAGattTGTGTCAAAAGGTGAACTAGAAGCTCACAGCCGCAAACACAGTGGAGCACACCCTTTTATCTGCGACGACTGCGGCAATGGCTTCACCACCTCCAGCGCCCTCGTCAAGCACCGTCGAATACACACCGGGGAACGCCCTTACCTCTGCGACCTATGCCCCATGAGGTTCGCAGCCTCCGGCACTCTGAAAAACCATAGGAGAATACACACTGGAGAACGGCCTTTCCAATGTGTACATTGTGATAAGGCTTTTGTTCAACGGAATGATCTGATCTCACATATCCGTTGTCATACCGGAGAGAAGCCCTATGTTTGTACTCAGTGTGGGCAGTCTTTTAGAAAGGCTTCAGGGTTGAAGACTCATGTTAAAATGCATGTGAAGGAGCCGGTGGCCATGATTCACCATGGGGTGAAAGAAATGTTGGGGTTGAACTGCGAGGCTATGAAAGATGGGTTTGCGGCTATTGATAATTATGTGCCCAAGATTGGGGAATGA
- Protein Sequence
- MDITVEIFDKICRVCLTQASQKKSLFMKQDGEERNLFDILSFTANINVKLDDSLPKQVCVECETLMYKADAFKRRCLESETLLNNIWQNSVGDDKKLPQVGVKLTIKREQNDLDDNFDHLHSFNHADPTSSHYEEGYDKNNVLKGLAVCSIVDASCDTDTKSVIPLTYPQPGKQEAEDDFEDDHHDYDEFPIDFNNTQTFETVPLEFSPEKPIKSENKVYKCICGLQFTNEVKYKSHSKQKLCFKYKRIFEKLGKIDDIIHLNNKLKCAECDLEFNNPNKLIAHQRLQHKKPIQSKKLPIIIKKDEVHQCSLCPRKFTSKKLLNKHIKRHPSMDNRRHECDICKRVFKYKAFLDKHKVTRHSKSNNLVCPICLQTFTSEEMLKEHKDCQKDDKKHQCNICQRAFGMLCTLKEHMRTHTGEKPFLCSECGKGFSQKTNLGQHMRRHQGLKPFKCENCEKRFVSKGELEAHSRKHSGAHPFICDDCGNGFTTSSALVKHRRIHTGERPYLCDLCPMRFAASGTLKNHRRIHTGERPFQCVHCDKAFVQRNDLISHIRCHTGEKPYVCTQCGQSFRKASGLKTHVKMHVKEPVAMIHHGVKEMLGLNCEAMKDGFAAIDNYVPKIGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -