Nrev005348.1
Basic Information
- Insect
- Nycteola revayana
- Gene Symbol
- -
- Assembly
- GCA_947037095.2
- Location
- OX344840.2:7123087-7125558[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 6.3 5.9e+02 2.2 0.1 2 20 16 34 15 34 0.93 2 17 0.00053 0.05 15.0 2.2 1 23 93 115 93 115 0.98 3 17 0.066 6.2 8.5 0.0 3 23 144 165 143 165 0.91 4 17 0.00017 0.016 16.6 1.8 1 23 185 208 185 208 0.98 5 17 8.3e-05 0.0078 17.6 0.5 1 23 213 236 213 236 0.96 6 17 0.0026 0.24 12.9 1.0 1 23 241 264 241 264 0.96 7 17 5.5e-06 0.00052 21.3 0.9 2 23 267 289 267 289 0.97 8 17 0.033 3.1 9.4 1.9 2 20 297 315 296 317 0.92 9 17 0.0021 0.19 13.2 1.3 1 23 370 393 370 393 0.97 10 17 0.98 92 4.8 0.0 3 23 422 443 420 443 0.91 11 17 0.21 20 6.9 0.0 2 23 466 489 465 489 0.95 12 17 1.1e-06 9.9e-05 23.5 0.2 3 23 496 517 495 517 0.95 13 17 0.0018 0.17 13.4 2.8 2 23 522 544 521 544 0.94 14 17 0.0023 0.21 13.1 2.7 1 23 549 572 549 572 0.97 15 17 3.9e-06 0.00037 21.8 5.0 1 23 576 599 576 599 0.97 16 17 0.00028 0.026 15.9 0.3 2 23 606 627 605 627 0.96 17 17 3.2e-06 0.0003 22.0 0.6 1 23 633 655 633 655 0.97
Sequence Information
- Coding Sequence
- ATGATCAACCACGTAAGGAGATTGCATCTTAAAGAGAAGAATGTTGAGTGTTCGGTGTGCTTAGAAAAGTTCTTTGACGGCCAAAGGCTGAAGATGCATATGCCTGCAGAAATAGAAGATAACAGAAAATGTAGAAGAGAATTCACAGCAAGAACCATTTTAATTTCAGATGAACAGCCCGGACCCTACGAGGGCTGTACCTCTGAGAAGAGACGAAAAAACTTGACAACAATATTCAACCATACCACAATAATGCCATTTAAATGGCGAGGCAAATACATCTGTTTTTACTGCGGCAAAAACTACTCGGAGTACCCAGAATTCAAAAAGCATACAAAATCGCACGGACCTTGTACAACAAAAGATTATTCGCTAAAAATAGTTAAAGGAAAGAACTTGGAAATAAAACTCGATGTTTCGGAAAACGCTTGCGACATCTGCAATGAACCATTCAATCGAGTCGACGATATAATCGATCATTTGATTGGCAAACACAATTTAGACTACGATAAAGATGTTGAAGTTCCTTTACAAGAGTATCGATTGACGGACTTCAAATGTTTGCATTGCGAAGAACAGTTTACTTACTTTGGTAATTTAGTACGTCATGTGAACACTGTTCATCCGCAGAATTGTTTTATATGCGACGATTGTGGAGTCTCATTCAATAAAAAGAGGGACTTGGCTATACATTTTAGGAATTACCATCGTCAAGGGGGCTATCCTTGTGACTTGTGTCTGCAGAACTTTGAAACTCAACAATCTATGCGGCGACACCAAAATAATACACATTTTAGGCAATGCAAAAATTGCGGGCTTAAATTTGCTTCCTTATCCCTATTACAAAAACACATGCAACGAGAACACCCTCAGAGCGAGGGTAACATTAAGTGTAGCCACTGCTCAAAAGAATTTCATACAGCTTTAGGATTAAGGCAGCATACAAGCAAATGCAAGGTGAAAATGATATCCCAAATTCTTCCCAATACATCTTTATCTGAAGACAATTTAGAACCTAAGAGAAAGCAGAATCTTCAGCAAATACGGcaaaatatacttacaatacTTAACATGTCCACAGCTGTACCTTTTAAGTTCTTTTCCAAATATTCTTGTTTCTACTGCTCCAAGAAATTCGTTGAAATCGACGAACTTCGCTACCACACTAGCACTGAACACCCCGTCTGTGATTTGAAATCTAAATGTATGAAGAAATGTAAGGGAGAAAGAATCTCAGTGAAAATTGATATTTCTAGTCTCGCCTGTAAAATATGCAGTGTTCCCATACCTGATTTCGACAGTTTGATCAACCATTTAATAGCAGAACATACAGCTAATTACGATAAAACAATAACTGGCTGTTTAGAACCTTATAAAGTTGTTAAAGACAACATGCCTTGCCCTATATGTCCAGATCGCGTATTCCGTTACTTCGGAATCCTACTCCGTCATATGAATTCGGAACATAGTAACAATAACCGAATATGCGACTTCTGCGGTCGCAGTTTTCGTAATGCCTCAAACTTGAACGTCCATATCAACTATGCTCACACAGGCTCTTGTGAATGTGACATTTGCGGTGTGAAGTACAAAAATCAATGGTGTTTAGCAAGACATAGAGCGAGAACGCATGACGCTAAAGACTATAAGTGCCCTAAATGTCCCGAACTTTTTCAATCACAGTACCACAAGCAGAAGCATTTGATCAAAGACCATGATATAGGTCATAAGTGCAGCTATTGCGGCAAAATGTTTACGAGAAATTCCTTTATGAAAGATCATATTAGGCGGACGCATTTGAAGGAAAAGAACGTGCCTTGTTCTGTTTGTAATGAGAAGTTTTTTGATAATTACTTGCTGAGAATGCATATGGTTAAGCACGAAGGTGATAGGAAGTTTAATTGCTCCATTTGTGGCAAAGCTTTTTTGAGGAAGAGCAATTTGAGTTCCCACATGGAAATGCATAAGAAATATGGACATGTACAGTTGCCGATATAG
- Protein Sequence
- MINHVRRLHLKEKNVECSVCLEKFFDGQRLKMHMPAEIEDNRKCRREFTARTILISDEQPGPYEGCTSEKRRKNLTTIFNHTTIMPFKWRGKYICFYCGKNYSEYPEFKKHTKSHGPCTTKDYSLKIVKGKNLEIKLDVSENACDICNEPFNRVDDIIDHLIGKHNLDYDKDVEVPLQEYRLTDFKCLHCEEQFTYFGNLVRHVNTVHPQNCFICDDCGVSFNKKRDLAIHFRNYHRQGGYPCDLCLQNFETQQSMRRHQNNTHFRQCKNCGLKFASLSLLQKHMQREHPQSEGNIKCSHCSKEFHTALGLRQHTSKCKVKMISQILPNTSLSEDNLEPKRKQNLQQIRQNILTILNMSTAVPFKFFSKYSCFYCSKKFVEIDELRYHTSTEHPVCDLKSKCMKKCKGERISVKIDISSLACKICSVPIPDFDSLINHLIAEHTANYDKTITGCLEPYKVVKDNMPCPICPDRVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNASNLNVHINYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDYKCPKCPELFQSQYHKQKHLIKDHDIGHKCSYCGKMFTRNSFMKDHIRRTHLKEKNVPCSVCNEKFFDNYLLRMHMVKHEGDRKFNCSICGKAFLRKSNLSSHMEMHKKYGHVQLPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -