Nrev010613.1
Basic Information
- Insect
- Nycteola revayana
- Gene Symbol
- -
- Assembly
- GCA_947037095.2
- Location
- OX344843.2:13984036-13984881[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-07 3.7e-05 24.3 0.0 2 35 23 55 22 63 0.89
Sequence Information
- Coding Sequence
- ATGCCTCCATCGAAaccaaatactaaaaaaatcggTGTCGTGAAAAGAAAATTGTTCCAGTACTCACCGCATAAAATAACATTAGCGTTGAACGCAATAAAGAATGGGATGCCCGTTGCCACTGCTAGTAGAGATTTTAACGTACCTCGAACGACTTTGCGTCACAAAATTTCTGGAAAAGCGCCTGAAACTTCTGGACATGTAGGGCCCCAGTCAGTTCTTGGAAGACAAATAGAAAACGAACTTGTCGTATGGATCAAAGATTGCGCTCGCGCTGGATTTCCTATCAACAAGGAAGGATTACTGGATTCTGTTAAGAAAATTGTTGTGAAGGGCCAAATTGCTACACCTTTTATAAATGATAGACCTTCGAGATCCTGGTTCGACGGATTTATGGCAAGACATCCTGATTTAAGCCAAAAACATGCCGAGTATATTAATAAAGCTCGTGCCTTAATAACTGAAGAGAAAATTCGGAACTGGTTCCAAGAAATTTCTTCATTGCTCGGTGATGAAAATTTAAAGATTCTAGAAAACCCTGCGAGAGTGTGGAACTGTGATGAAACATCTTTTTTTCTAGCTCCAAAAGGATCTCTTGTGTTAGCTGAAAAGGGACAACATGTTTACGATACATCAAAAAACAgcgataaagaaaatataactaCCCTATTTACTGTCAATGCCGCTGGTGAATATGCACCTcctttaactatttataaatacaaaagaaTGAGTTCTGAAGTTCTTGACAATGCACCAAATGGATGGGGAGTTGGTAAAACCGATAAAGGATGGATGAAGGGCGAATCTTTCTATGAATATGTGGCAAACGTCTTCATTCCTTAa
- Protein Sequence
- MPPSKPNTKKIGVVKRKLFQYSPHKITLALNAIKNGMPVATASRDFNVPRTTLRHKISGKAPETSGHVGPQSVLGRQIENELVVWIKDCARAGFPINKEGLLDSVKKIVVKGQIATPFINDRPSRSWFDGFMARHPDLSQKHAEYINKARALITEEKIRNWFQEISSLLGDENLKILENPARVWNCDETSFFLAPKGSLVLAEKGQHVYDTSKNSDKENITTLFTVNAAGEYAPPLTIYKYKRMSSEVLDNAPNGWGVGKTDKGWMKGESFYEYVANVFIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00935649; iTF_00935650; iTF_00935651; iTF_00935652; iTF_00935661; iTF_00935647; iTF_00935648; iTF_01076427; iTF_01125411; iTF_01443780; iTF_00357427; iTF_00357429; iTF_00276317; iTF_01359696; iTF_01359695; iTF_01281280; iTF_00634395; iTF_01375728; iTF_01547486; iTF_00164288; iTF_00164296; iTF_01359691; iTF_00634385; iTF_00745629;
- 90% Identity
- iTF_01443780;
- 80% Identity
- -