Nrev020254.1
Basic Information
- Insect
- Nycteola revayana
- Gene Symbol
- -
- Assembly
- GCA_947037095.2
- Location
- OX344851.2:3370036-3371925[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-07 6.1e-05 23.6 0.0 4 39 18 54 15 58 0.92 2 2 1.9 4.6e+02 1.6 0.0 18 31 362 375 358 386 0.78
Sequence Information
- Coding Sequence
- ATGCCGCGAAACTATAAAAGAACAACAACTCGACAATCTTGGAGTGAGGTGTCAATGAAAAAGGCCATTCTGGAAGTTATCGAAGGAAAGAATGGATATCGTGTGGCTTCTCGAATGTACTCGATTCCACAATCGACATTAGAAGATcgagtaaaaaaatatcgtattaATAACAATGCTGAAGAAGCTTCTAAAAAGGGTCTAGGGCGCTTCAAGACAGTTTTTACAGCGGAGCAAGAGAGTTTAATGTGCCAACACCTAAAAGATCTAGAAGCTCAATTATTCGGTCTCACATACAAGGATTTTCGACGACTTGCTTTTGAAATGGCGGAGAAAAATGGCATTGACCACAATTTTAACATAGACACGCAATTAGCTGGAATGGACTGGCTATATGGATTTTTACGTCGTCATCCTGAATTATCATTACGCCTCCCAGAGCCTACGTCCGTTGCACGCGCGATGGGCTTTAACAGAGTGAATGTCTCTAAGTTTTTTTCTCTGTTGGTTGAGCTGCAAGACAAGTACAAATTTGGGCCAACCAAGATATTTAACGTCGATGAAACTGGGATCACGACCGTCCCCAAAAAGAAATCGAAAGTGCTTTCTTTGAAAGGAAAGAAGCAAGTAGGCGTTATCTCTTCGGCTGAAAGAGGCCAGTTGACTACTGCAGTGATGTGTGTATCAGCTGCAGGCGTTTATATACCACCACTTCTGATTTTCCCGAGAGTCCGAATGAAGGCTGAACTGTTAGACGGTACACCTCCTGGAACTATTGCTGTATGTCATCCTAGTGGATGGATACAGAGTGACATATTTGTTCACTGGCTAACACATTTTATCTCGAACGTCAAACCAACCAAAGATGACCCTGTTCTGCTTTTGCTAGATGGACACGCAACGCACACCAAAAATCTTCCCTTGATAGATAAAGCCCGAGAAAACGGAGTCATCATAGTCAGCTTTCCTCCTCATTGCACACATCGCCTGCAGCCGCTTGATGTTAGCATTATGGGGCCGTTAAGCACTTATTACAGTCAAGAAGTGATGACGTGGCTGCGGAATAATCCAGGTCGTGTTGTCACTCAATTTCAGCTTGGAAGGCTTTTTGGAATCGCGTACTCCAAAGCAGCGACGTTACAAAATGCAATGAgcggtttttttaaaacagGAATATGCCCTTTAAACCCCAATATATTTGATGATCATGATTTTGTGTCAGCTAGTACTACGGATTATGACCTCGCATCTAACGAGCCAACAAACTATACATCTGATCTTGTTACGGTTGCAGATCATAATATAAACaccattaataacattatcgttgaagaaaataaacaaacaatggCAAAGGAGCAGCAAATAGCAGAAACATCCCCGATTCATTCACAACCAAGCACTTCAAAAACAATGGTAAGGCAGCAGCAATTAGCAGAAACATCCCTAATTCATGCACGACGTAGCCCTTCAAAGCGATTGGCTGTTAGTCCAGAACCAACTACTGTACGGCAATCGGTATCATCATCCTTAGCCTTTTCTCCAGCTGATATTATGCCTAAGCCCCATGTTGTTAGAAAAACAACTTCTAGTGCACGTCGAGGAAAAACTGCAGTTATAACTTCATCGCCATATAAATTAGAACTTGAAAATAATGCCAAAAGAATAAACAAGAAGAATGTTCCCAAGCTAAGCGATGATATATCGAAACCCAAAGAGAAAAAGATATCAGATGATATGTGTATTTATTGTACTGAAATTTATGGAAATACACGGATAAGCGATGCTTGGGTACAATGTCTCAAGTGTAAGAAATGGGCCCATGAAGGCTGTACTGGTTGGGAGCTTGAAGATCTTGACGAGTTCCATTGCTATCGTTGCCCGGGGTAA
- Protein Sequence
- MPRNYKRTTTRQSWSEVSMKKAILEVIEGKNGYRVASRMYSIPQSTLEDRVKKYRINNNAEEASKKGLGRFKTVFTAEQESLMCQHLKDLEAQLFGLTYKDFRRLAFEMAEKNGIDHNFNIDTQLAGMDWLYGFLRRHPELSLRLPEPTSVARAMGFNRVNVSKFFSLLVELQDKYKFGPTKIFNVDETGITTVPKKKSKVLSLKGKKQVGVISSAERGQLTTAVMCVSAAGVYIPPLLIFPRVRMKAELLDGTPPGTIAVCHPSGWIQSDIFVHWLTHFISNVKPTKDDPVLLLLDGHATHTKNLPLIDKARENGVIIVSFPPHCTHRLQPLDVSIMGPLSTYYSQEVMTWLRNNPGRVVTQFQLGRLFGIAYSKAATLQNAMSGFFKTGICPLNPNIFDDHDFVSASTTDYDLASNEPTNYTSDLVTVADHNINTINNIIVEENKQTMAKEQQIAETSPIHSQPSTSKTMVRQQQLAETSLIHARRSPSKRLAVSPEPTTVRQSVSSSLAFSPADIMPKPHVVRKTTSSARRGKTAVITSSPYKLELENNAKRINKKNVPKLSDDISKPKEKKISDDMCIYCTEIYGNTRISDAWVQCLKCKKWAHEGCTGWELEDLDEFHCYRCPG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01076405;
- 90% Identity
- iTF_01076405;
- 80% Identity
- -