Nrev001731.1
Basic Information
- Insect
- Nycteola revayana
- Gene Symbol
- -
- Assembly
- GCA_947037095.2
- Location
- OX344838.1:30292046-30292690[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.2e-09 1.5e-06 28.8 0.0 1 35 8 41 8 47 0.89
Sequence Information
- Coding Sequence
- atggCACCAAGAAAAGACTTCACAAAAGAACAAATGGCTAAGGCTATCGAAGATGTAAGAAAAGGAGAAAAAATATCTGTTGCTGCTACAAGATACGGAGTCCCAAGGAtaacattacataataaaatcacTGGGAAAAGTCCTATAGATTGTAATCTAGGTCCAGCTACTGTACTTACCTACGATGAAGAAAGGATACTCGTAAAATGGATAATCTTTATGGCTGAAAAACACTTCCCTGTCACCAAAGAACAATTGCTTGATAgtgtccaaaaaataatatctgaGAAAAATTTAGATTCTTGTCCGTTTACAGACAATCGGCCAGGAAAAAAGTGGTACTCTTCGTTTTTAAAAAGGCATCCAGATCTCTCTGAACGCACAGCGCAACATTTAAGTAAAGCGAGAAATGAAGTCACAGAAGATGACATAATCCGTTGGTTTGAAGTAATTAAAGGCTACCTTGAAAATAAAGACTTGCTTGATGTTATAAATGaccctgaaagaatttttaattgtGATGAAAGCGCTTATAGATTGTTACTTTTTGCGAGTTCCTGTAACTTGTGTAGGGATAACATTGATATATTGTTCGCAATGGAAAATAACGTGATTTTTGAGACTGatatttcaataatacaataa
- Protein Sequence
- MAPRKDFTKEQMAKAIEDVRKGEKISVAATRYGVPRITLHNKITGKSPIDCNLGPATVLTYDEERILVKWIIFMAEKHFPVTKEQLLDSVQKIISEKNLDSCPFTDNRPGKKWYSSFLKRHPDLSERTAQHLSKARNEVTEDDIIRWFEVIKGYLENKDLLDVINDPERIFNCDESAYRLLLFASSCNLCRDNIDILFAMENNVIFETDISIIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01076385; iTF_01076387; iTF_01076388; iTF_01076383; iTF_01502033; iTF_01317226;
- 90% Identity
- iTF_01076385; iTF_01076387; iTF_01076388; iTF_01076383;
- 80% Identity
- iTF_01076387;