Nrev016926.1
Basic Information
- Insect
- Nycteola revayana
- Gene Symbol
- -
- Assembly
- GCA_947037095.2
- Location
- OX344847.2:21331568-21334413[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-11 3.5e-09 37.2 0.0 9 45 4 41 4 41 0.96 2 2 6.9e-18 1.7e-15 57.4 0.0 1 42 48 90 48 92 0.95
Sequence Information
- Coding Sequence
- ATGTGTTGTGTTGATCACATCCGCGCCGGAGACTCCAGCGTGCAGCGCGCCGCCGCGCTCTACGGGATACCCACCGgaACTCTGTACGGGCGATGTAAACGGGAAGGTATCGAGTTGTCCCGGTCTAATCCAACTCCGTGGTCTGAAGACGCTATGGGAGAAGCCCTTGAGGCAGTCAGGGTGGGCCAGATGTCCATAAACCAAGCCGCCATACATTTCAACTTACCATACTCCTCTTTGTATGGGCGGTTCAAGAGATGCAAATACCAAATGCAAGTTCTTCCAGAAAATCAGCAGCAACCTCTCACGGACCTTCCGAATAACGACAACGATTTGAATGCCGAGCTCCAGTACTACCAACACAACAATATGCCGCAACACGAGCCGCACACGTACGCACACGTGTCCGACTACACGCACGACACGCACGACGCACACGTGCACGACGTGCAGTACGGGTATTATCAGAACTTTAGTGGGGTGGTTACCAGCTGA
- Protein Sequence
- MCCVDHIRAGDSSVQRAAALYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQMQVLPENQQQPLTDLPNNDNDLNAELQYYQHNNMPQHEPHTYAHVSDYTHDTHDAHVHDVQYGYYQNFSGVVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -