Nrev016925.1
Basic Information
- Insect
- Nycteola revayana
- Gene Symbol
- -
- Assembly
- GCA_947037095.2
- Location
- OX344847.2:21318613-21329144[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.8e-12 1.9e-09 38.1 0.0 4 39 150 186 147 190 0.89 2 3 4e-12 9.6e-10 39.0 0.2 2 39 202 239 201 242 0.92 3 3 3.9e-09 9.3e-07 29.4 0.1 2 32 257 287 256 288 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCTACGGACTGTCCCAAGTGAAATGCGAGCCTTTGTCGGAAGAAGAAGACAGCAACTCACAAATCACGCATACGTACGACTATCTATCTATTCAGGAAAGTGGGTTGGAGGAGTTGGCACCGCTGGCGCCGGCGGCTCCGGCTGCTACACCAGTCTGCGTGAAACAAGAGAGGTCTGAGACTCCGCCCACCGCTACTCTGGAAACCTTAGAGTCAGCACCACATAGTGCTAAGAGTAATTCGCTACTGGATAGACATTTTGAGCTGATGAGTCCACGAGATTGTACAGACACGACGAATTTCTTGCCGTTATTAGCAGTCAAGGATGAACCATCGTCTGAAGGTGAACAACATCATCTCAGCGGGGAGGACACGAGTGATTCTTGTGGGAGACAGCCGTCACCAGCGCCGAGACACAGTCCGAAGAGTTGGACTCAGCAGGATATGGAGCTAGCGCTGGAAGCACTTAGGAGTCATCAGATGAGCCTAACTAAGGCATCAGCCACGTACGGTATCCCGTCCACCACGCTCTGGCAGCGCGCGCACCGCCTCGGAATCGACACGCCCAAGAAGGAAGGTGCCGCCAAGTCCTGGAGTGACGCTGACTTACGAGCAGCTCTCCATGCTTTGAGAACTGGAGCTATTTCTGCCAACAAGGCCAGCAAGGCTTATGGTATCCCGAGCAGCACGCTGTACAAGATAGCGCGGCGCGAGGGCATCCGCCTCGCCGCGCCCTTCAACGCGGCGCCCACCGCCTGGCGCCGCGCCGACCTCGCGCGCGCACTCGCCGCCATCCGCGCCGGAGACTCCAGCGTGCAGCGCGCCGCCGCGCTCTACGGGATACCCACCGGTACGTGCACTGTTGAGCTCTGCTGA
- Protein Sequence
- MPGYGLSQVKCEPLSEEEDSNSQITHTYDYLSIQESGLEELAPLAPAAPAATPVCVKQERSETPPTATLETLESAPHSAKSNSLLDRHFELMSPRDCTDTTNFLPLLAVKDEPSSEGEQHHLSGEDTSDSCGRQPSPAPRHSPKSWTQQDMELALEALRSHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSDADLRAALHALRTGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAIRAGDSSVQRAAALYGIPTGTCTVELC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -