Nmun036714.1
Basic Information
- Insect
- Nudaria mundana
- Gene Symbol
- GIP
- Assembly
- GCA_963556515.1
- Location
- OY748312.1:1132012-1139278[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.2 1.6e+02 4.3 0.1 2 19 1311 1328 1310 1333 0.93 2 10 4 5.1e+02 2.7 0.2 1 19 1336 1354 1336 1356 0.93 3 10 0.47 60 5.6 3.6 1 23 1361 1384 1361 1384 0.96 4 10 0.00019 0.024 16.3 0.2 1 23 1387 1409 1387 1409 0.97 5 10 0.002 0.26 13.1 0.3 3 21 1415 1433 1414 1434 0.94 6 10 3.9e-05 0.005 18.5 0.3 1 23 1453 1476 1453 1476 0.95 7 10 2.7e-05 0.0035 19.0 1.0 1 23 1482 1504 1482 1504 0.97 8 10 3.9e-05 0.0051 18.5 4.1 1 23 1510 1532 1510 1532 0.99 9 10 0.061 7.9 8.4 0.7 1 23 1538 1561 1538 1561 0.95 10 10 0.00013 0.017 16.8 2.4 2 23 1567 1588 1566 1589 0.94
Sequence Information
- Coding Sequence
- ATGGCGACTGTGGGAACAATAGCGTCCACGCCGTCAGCAGTTTTTGCGATTCCGTTGTTGAACAGTGAAAATTTTGCTAAATGGAAATTTCGACTGTCATGTCTCCTCGAGGAACGGAAATTATTGGATGCTACAAAAATATCCAAGGTGGATGGAGAtttggaaaaagaaaaagatgCGAAGGCACGCTCATTGATCGTACAATGTGTTCCAGATCGATACTTGGACACGATCAAAGATGCAGAGACATCATTTGAGATGCTACAATGCCTAGATGCCATGTTTCAtagaaaaaatgtattttccaAATTACATTTACGGAAGAAACTTTTGTCAATAAAGTTGGGTGATACCAAAATGGAAGAGTATCTATACAAATTCGAATCATTGGTGAGAGAAATAGAAAATATAGACAAAAAACTAGATGAAGAGGATAAAGTTTGCTATCTGCTCATGGGTCTATCGGATACATACAGTACGGTCATCACAGCTATTGAAACATTGTCAGGTACTGTAACATATGAATTTGTAAAAGCAAGGCTATTAGATGAAGAGCTTAAAAAGAATTTTAAATCTAATGCAGAGCCAGAAACAGTTTTGAGTAGTGAAATAGAATGTTTCCGATGCCATAAGAAGGGCCATATAGCAAAATATTGTCGGAATAATCAGTTCAACAGAGGCCGCAGGGGAAAAGGTCCAACAAGAGGCCGCGGCAAGCCATCAGCGAGCAGCAACTATGCGTCGCAGGCAGATTGGAGTGTGATAGCCATCAGTAATACACAACAATGTAACCTAACATGTAAAGACAAGAGCATCAAGTTCATTATTGATTCTGGAGCCACcgagaatataataaaagaagAAGTGGAAGTATATATGCATGAGGTAAAGCACTTGGAGCAAACAATTCACATTAGAATGGCAAATGGAAATATACTACAAGCACAGAAGAGTGGCATTATATCAATACTGAGCAACGGTATTAGAATGAACTTGTCATGCCTAATAGTACCAGGTATTGCTCATAACTTAGTATCAGTGAGTAAACTATCACAAAAAGGATTCAATATATTATTCGACAAGCATGGAGtgcaaataagaaataaaaatcaaGTATGGAAATCAAATACCTCAGGTCTATTGTTTATACTAGAAGGAATTATTAATGAAAGTTGCAACACGGTAACTGAAAGTGATGACATGTTGTGGCATAGAAGACTTGGACATTTAAATAGAAAAAGCCTGATCAAAATGAAGTTACCAGTATCTAATAAAGTATGTGATGTTTGTATGGAAAGCAAAGCAGTGAGAAACCCATTTTACCCAGTAAGGAAAGTTCAATCTCATAGAATCGGTGACCTCATTCATACTGATGTAGCAGGACCGATGAACCCAACATCAAAAGGAGGTTATAGATACATGATGACAGTACTCGATGACTATTCTCATTATTTAGTTATATACTTACTACGGAACAAATCTGAAACTGGCCAAAagctaattgaatttataaatgtttttgaaaaacaaaaggaaCAAAACATAAAGAGAATAAGATGTGATAATGGTGGAGAATACACCTCGAACATATTGAAGCAGTTCTGTAAAGATAAAGGAATTAATATTGAATATACACAGCCATACAGTGCACAACAAAATGGGAAAGCAGAAAGGATGAACCGTACAATTTTTGACAGAGTACGAGCCATGTTAAGCGAGTCAAATCTTCCCAAAGATTTATGGTCTGAAGCAGCAATGTGCGCAGCATATCAACTGAACAGATGTCCATCTAAAGCTATTCATAATAGAATACCCTGTGAACTTTACACAAGAGATATGGAATTAGATAAACTGAAAGTATTTGGATCAAAAGGATGGATGGTAACCATGCCAAGAGTGACAAAATTGTCTAACAGAGCTGTACCAGTAAGAATGGTTGGCTATTCTGAAAATGGATATAGAGTATGGAATCCATCAACAGGAGAAGTTACAGTGTCAAGAGACATTAAGTTCAATGAGAATGATTACAGATATGAACCTGAAACAACAATGAAAATGGATGAACATAGGCTGATTTATGAAGATGTTGAAAATGATCTAGAGCGAGTTACTGAATCAAAGAAACCTTTGTCGTCGAAACAACAAATATGTGAACAGAAAGAAATTGACTCCAAAATGGAAGATGATCATACTGAAAATGAATCAAATCAAGAAGAAAAAATGAGACCTAAAAGGCAGGTCAAACAACCCGAAAGATATGATGACTATATTATGAATATTGCATATGCTATGAGTGTGTTAGATCCTACATGCTATGAAGAAGCCGTCAAGGATAGTGACTGGCAAGTAGCAATTGATAAAGAAATCAAACAATTACAAGATATGGAAGTATGGGTAGAGTGTCCGTTACCCGAGAAAGCTAAAGCAATAGATACCAAGTGGATCTTCAAATCAAAACTAGATGGTACAAAGAAAGCCAGGTTGGTAGCAAGAGGCTTCCAACAGGAAATAGTTGGTCAAGAACTATACTCACCAGTTGCCAAGATGACTTCAGTAAGATTGTTCCTATCACAAGCTGTAATTAATGATTGGGAGCTTAGACAGCTGGATATACCATCAGCATTTTTAAATGGAAAATTGCAATCAAAAGTGTATATAAAACCACCACAAGGAGTTAGAATGAAGAATAAGAGTAATGTTTTGAAATTGAACAAAGCACTTTACGGGCTAAAGGAAGCGCCTAAAGTATGGAATGGTACAATGAATGAATTTCTCAAGAATAAGTTAAATATGAACCGTTCTGCATatgatgtatgtttatataccgGAGAGAATATCTGGTTAATAGTCTTTGTCGATGACATTCTTGTAACTGGAAAATCAGAGAACATAAATATCACAGTGAAGTATTTACAAGAAGAATACAATGCAAAGGATATGGGAAAAGCTAAAAATTTCTTAGGTATGGATATTGAGAGAAATGAAAATACAATGAAAGTATCACAGAAAAGATTTATTGAAAAATTGTTACAGCAGTACAATATGACTATGTGtaaaacatcaagaacaccaatgGAGAGTTTATTCCAGTTCGATGACAGTGAAGAAAAAGTTATGAAGTTGCCATACAGAGAAATAGTTGGCAGTCTCAACTACTTGTCCATGGTCGGCAGGCCAGACATAACTTTTGCCACAAGTTATTTAAGTAGATTTCTTGAAAATCCGACGAATCAGCTATGGATGGCAGCCAAGCGTGTACTGCGATACCTGAAAAACACAAGAGAAAAAGGATTAGTATACAAGAAGATTAAGAATAATGATTTACCTAATATCTTAGCATATTCAGACTCGGATTGGGCAGGTGATAAGCTGGACAGAAAGAGTACCAGTGGTTCAGCAATATATCATGGAGAAAATCTGATATCATGGTCTTCAAAGAAACAACAATGTGTTGCCTTATCAAGTTCTGAGGCCGAGTACATTGCAGCATCAATGTGTGCTAGTGATTTATTATATGTGCGCGGACTAACATTAGAATTTCAAAGTCAGTGTGTAGTGTTAAAAGTTGACAATCAAAGTGCATTGAAAATGATAAACAATTATGAAAATACAAAAAGGTCTAAACATGTAGACATTCGTGTGCATTTTattaaagatattATAAATGAAGAAATTGTTGGATTGGATGCTATATGTATGGAATGTGTTGATAAAGCACTTGAAGTTCAGAAATTTCTTGCAACCTGCAGAAATTCCACTCAAGTTCTACATAATGTAGTTGATAACCTATCCGAATCATTTAATATTCAAGTTGGACTGTATCCAAATGGTGATCATGGGCTGTATGTAACTGTTGGAGAATTTGAATCAAAGCTTGTGTTAGTTAAAAACGATTTAGCAAAACCTCATGTAGTCAAACCAAAGCCCTTATCCTGTGCAGAATGCTCAGAACAGTTTGATGATATTGTCAATCTAAAACTGCACAATTGGACTACCCATTGTACATTTACTTGTGACAAATGTTATTTTACAACTGGAGATGATACAGAGCTGACCAATCATGCTGGTAGTGTACAGATGTACCAATGTGACTACTGTTATATTTATAGGTGTACAGAAGAAAGTCTCCAACAGCACCAAGATAAGTACCATGGCTTGTATGTGTGTAAAGATTGTGGAAGAGGCTTCCGAGGCCTGGAAAAGCTACAAGTTCATGAGGAAAAGCATTTAACTAAAAGTGACTGCCCAAAATGTGGTAAAAGCTATAACACCAGGGAGTTTTTCGTGAAACATGTAAAGCTATGCTTGGAAGGTATGATAGAGCCTCACCCAATGCGAAGCAAAATTAAGAAGACATACTTTTGTGATAAGTGTGACAAAGGGTACAGTACCCCTGGAGGTTTGAGAGTGCACCAGAGATTTGTGCATGGTAATGCTAAGCCACATGTTTGTAAATTGTGTAACAAAGAATTCACTGCTCCTAGTTATTTAAAAGTACATATGGTTACTCACACAGGTGAACGAAACTTCAAGTGTCATATTTGTAATAGGAAGTTTGTGACGAAAGAGGCTTTACTGTATCATACGAGACGGCATACAGGTGAAAAACCATATACATGTACCATGTGTGATGACAAATTTGTTAATTCTTCAGCCAGAGCTGAACATATAAAGTTTAAACATGTTGGTCCAACACTGATGTGTGAGATATGCTCTCGTAAGTTTGTCACTCCAACATTCTTGAGACAACATATGAATAAACATCATGATCCTTCCAATAAACTGTATATGGGCAGGAATTTAATACCGCCAAATGTGCCAGCTATTGAAAATATGCGTGTCAAGCTTATGGAAACAGTTTAA
- Protein Sequence
- MATVGTIASTPSAVFAIPLLNSENFAKWKFRLSCLLEERKLLDATKISKVDGDLEKEKDAKARSLIVQCVPDRYLDTIKDAETSFEMLQCLDAMFHRKNVFSKLHLRKKLLSIKLGDTKMEEYLYKFESLVREIENIDKKLDEEDKVCYLLMGLSDTYSTVITAIETLSGTVTYEFVKARLLDEELKKNFKSNAEPETVLSSEIECFRCHKKGHIAKYCRNNQFNRGRRGKGPTRGRGKPSASSNYASQADWSVIAISNTQQCNLTCKDKSIKFIIDSGATENIIKEEVEVYMHEVKHLEQTIHIRMANGNILQAQKSGIISILSNGIRMNLSCLIVPGIAHNLVSVSKLSQKGFNILFDKHGVQIRNKNQVWKSNTSGLLFILEGIINESCNTVTESDDMLWHRRLGHLNRKSLIKMKLPVSNKVCDVCMESKAVRNPFYPVRKVQSHRIGDLIHTDVAGPMNPTSKGGYRYMMTVLDDYSHYLVIYLLRNKSETGQKLIEFINVFEKQKEQNIKRIRCDNGGEYTSNILKQFCKDKGINIEYTQPYSAQQNGKAERMNRTIFDRVRAMLSESNLPKDLWSEAAMCAAYQLNRCPSKAIHNRIPCELYTRDMELDKLKVFGSKGWMVTMPRVTKLSNRAVPVRMVGYSENGYRVWNPSTGEVTVSRDIKFNENDYRYEPETTMKMDEHRLIYEDVENDLERVTESKKPLSSKQQICEQKEIDSKMEDDHTENESNQEEKMRPKRQVKQPERYDDYIMNIAYAMSVLDPTCYEEAVKDSDWQVAIDKEIKQLQDMEVWVECPLPEKAKAIDTKWIFKSKLDGTKKARLVARGFQQEIVGQELYSPVAKMTSVRLFLSQAVINDWELRQLDIPSAFLNGKLQSKVYIKPPQGVRMKNKSNVLKLNKALYGLKEAPKVWNGTMNEFLKNKLNMNRSAYDVCLYTGENIWLIVFVDDILVTGKSENINITVKYLQEEYNAKDMGKAKNFLGMDIERNENTMKVSQKRFIEKLLQQYNMTMCKTSRTPMESLFQFDDSEEKVMKLPYREIVGSLNYLSMVGRPDITFATSYLSRFLENPTNQLWMAAKRVLRYLKNTREKGLVYKKIKNNDLPNILAYSDSDWAGDKLDRKSTSGSAIYHGENLISWSSKKQQCVALSSSEAEYIAASMCASDLLYVRGLTLEFQSQCVVLKVDNQSALKMINNYENTKRSKHVDIRVHFIKDIINEEIVGLDAICMECVDKALEVQKFLATCRNSTQVLHNVVDNLSESFNIQVGLYPNGDHGLYVTVGEFESKLVLVKNDLAKPHVVKPKPLSCAECSEQFDDIVNLKLHNWTTHCTFTCDKCYFTTGDDTELTNHAGSVQMYQCDYCYIYRCTEESLQQHQDKYHGLYVCKDCGRGFRGLEKLQVHEEKHLTKSDCPKCGKSYNTREFFVKHVKLCLEGMIEPHPMRSKIKKTYFCDKCDKGYSTPGGLRVHQRFVHGNAKPHVCKLCNKEFTAPSYLKVHMVTHTGERNFKCHICNRKFVTKEALLYHTRRHTGEKPYTCTMCDDKFVNSSARAEHIKFKHVGPTLMCEICSRKFVTPTFLRQHMNKHHDPSNKLYMGRNLIPPNVPAIENMRVKLMETV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -