Nmun038167.2
Basic Information
- Insect
- Nudaria mundana
- Gene Symbol
- -
- Assembly
- GCA_963556515.1
- Location
- OY748313.1:12824648-12838378[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.015 1.9 10.4 0.2 1 23 165 187 165 187 0.96 2 13 7.7 1e+03 1.8 4.6 1 23 194 216 194 216 0.96 3 13 2.3 3e+02 3.5 1.3 1 23 220 243 220 243 0.86 4 13 3.5e-06 0.00046 21.8 0.5 1 23 248 271 248 271 0.95 5 13 0.91 1.2e+02 4.7 2.2 2 18 278 294 277 306 0.69 6 13 0.00076 0.098 14.4 0.2 2 23 313 334 312 334 0.97 7 13 2.1e-05 0.0027 19.3 3.8 2 23 348 369 348 369 0.96 8 13 0.0017 0.22 13.3 2.5 2 23 375 397 374 397 0.95 9 13 0.00069 0.089 14.6 1.4 2 23 408 430 408 430 0.97 10 13 0.077 9.9 8.1 1.1 1 23 437 460 437 460 0.93 11 13 0.00097 0.13 14.1 0.6 6 23 473 491 473 491 0.96 12 13 4.4e-05 0.0056 18.3 1.6 1 23 500 522 500 522 0.96 13 13 0.039 5 9.0 0.3 1 23 527 550 527 550 0.95
Sequence Information
- Coding Sequence
- ATGGAGTTCGACACTAGCATAGAAATATCTGTAAAAAGTGAAAGAGTGACCTTAGAGACCGAAGAAAAATCGCCTGAGAGAGCAGAGAAATCCTCAGAAGATGCAGTATGGATCAAACGTGAAATTGAAGAAAATTCACAAGATGTAGTAACCGAGGAGTCACTGGTTTCAATAGAGGTTGATGTAAAACAAGAATTCTCTCCACATGAAgATAACAAATCGCCAGCCTCCCCATCAAAGTTGCCACTCAAAAAAAGGAAGACCTTGGGAAAGTCAGATGAAGGCGATGTTGTTGTGAAAAAGGAAAATGGAGAAGAAAATGCCAAAGACAGTACTCAAGGCAATGGGCAATCCGGAAAAGCGGAGGAATCTAAGGAACAATACATTATGTACTCATACGAGGTGATAAAGAACATACAAATAGTGACAATAACAGAAGAGGAAAGGCAGGTTGAACATGCCGAGAACATTGCTCAGAGGAAACACATGAAGCACTTCTGTGAGGACTGCGCTGTTGGGTTTGTACTGGAGTCGGCTTACAAGGTTCACATGAAGATACATACTAATGCATGCGGTGAATACGAGTGTGACGTCTGTCACTCGCACCTCAAGAACCCGGACATCCTGTACCACCACAAGTTGCGTCACTACCGGCGGTACCGCTGCCTGCTGTGCTGGTCCCGCTTCAAGGACAAGGACACAGCGGCTTGTCACGTGATGACCGACCATGTCGGGACCAGCTTCACTTGTGACCAGTGCGGGAGGGGATTCAAACGTCCCCAGTACCTGAAGCAACATATAGAGCAGGCTCACACAAAAGCCCTACATTTGGTGTGTCCCGTCTGTAGCAGGGTGTTCCACGAGAGGAGCTGGTTCAGGAGACCGCAGTACCTCAAGAGGCACATTGACCAGATTCATATCAAGCCGCTGGCCCTCACCTGTCCTGTGTGCCAGCGGGTCTTTCCTGAAAGGAGCGTCTACCGGTCGCACGTCAGGAATCACAACGAGGAAGTCCGCGCGAACACAATAAAGCTGCCCGCCACGTGCGGCTCGTGCGGGCGCACCTTCAAGAACAAGTCGTGCCTGCGCCGCCACGTGCGCGCGCACGAGACCAGCGACGTGCCCTGCACCATCTGCCGCCGCGTGTGCAAGACGCGCCACCTGCTGGCGCAGCACTACCGGGAGGTGCATCGGGAGACGTACGACGAGGCCCCCGAGGAGACGTGCGCGGTGTGCCTGCGCGTGTGCGCCACGCGCGCCATGCTCAACCGACACATGCGCAGGATGCACCAGGACAGGACTAAGAAATACCAATGCGACCACTGCCAACGCTACTACCTGACCAAAGGCGAGGTCCGGTCCCACATCGCGTGGTCCCACTCCAACGGCTCCCCTCGCGGCGGCCACGCGTGTCCCTGCGGCAGGGTGTTCCGCTCGCCCTCGCTGCTGCGCGCACACCACGAGAGGTTCCACGAGATGCAGGCGCCGGTCAAGAAACACGCCTGTGACACTTGTGGGAAGGCTTTTGCGAACAAACAAGTATTAAACAGACACAAAAAAAGTCATTCCGATGAGATGTTCCCCTGCAACGCTTGCGGACTACTCTTCAAAACACAACCGTATGTCAAAATTCACTATCAActtaagcatttaaatatgactcGTGCTGAAATAAATGCCAAGCGTAAACTTAACAAGCATAACCGTATACCTCAGAACAATCTTCATGTTAAAACTGAATGGGAAAACCAGTCTGATTTAACTAAACCCGGTTTAACTAAAACCttgcctataactcctgaattgAATACGGTTGAGCAAATGAATGAGATTAATGTAAAGATTGAACGTGAAAGTGATGATGAAGCAGAAATGTCTGTCCCGttgtttcagacatttgttgatgTCAAAAGgaattaa
- Protein Sequence
- MEFDTSIEISVKSERVTLETEEKSPERAEKSSEDAVWIKREIEENSQDVVTEESLVSIEVDVKQEFSPHEDNKSPASPSKLPLKKRKTLGKSDEGDVVVKKENGEENAKDSTQGNGQSGKAEESKEQYIMYSYEVIKNIQIVTITEEERQVEHAENIAQRKHMKHFCEDCAVGFVLESAYKVHMKIHTNACGEYECDVCHSHLKNPDILYHHKLRHYRRYRCLLCWSRFKDKDTAACHVMTDHVGTSFTCDQCGRGFKRPQYLKQHIEQAHTKALHLVCPVCSRVFHERSWFRRPQYLKRHIDQIHIKPLALTCPVCQRVFPERSVYRSHVRNHNEEVRANTIKLPATCGSCGRTFKNKSCLRRHVRAHETSDVPCTICRRVCKTRHLLAQHYREVHRETYDEAPEETCAVCLRVCATRAMLNRHMRRMHQDRTKKYQCDHCQRYYLTKGEVRSHIAWSHSNGSPRGGHACPCGRVFRSPSLLRAHHERFHEMQAPVKKHACDTCGKAFANKQVLNRHKKSHSDEMFPCNACGLLFKTQPYVKIHYQLKHLNMTRAEINAKRKLNKHNRIPQNNLHVKTEWENQSDLTKPGLTKTLPITPELNTVEQMNEINVKIERESDDEAEMSVPLFQTFVDVKRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -