Basic Information

Insect: Nudaria mundana
Gene Symbol: -
Assembly: GCA_963556515.1
Location: OY748315.1:1446394-1447992[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2 2.6e+02 3.6 4.4 1 23 209 234 209 234 0.84

2 10 0.0057 0.73 11.7 6.0 1 23 240 262 240 262 0.99

3 10 0.4 51 5.9 3.9 1 23 268 291 268 291 0.94

4 10 0.0059 0.76 11.6 0.0 2 21 296 315 295 316 0.93

5 10 0.00015 0.02 16.6 4.0 2 23 335 356 334 356 0.95

6 10 5e-07 6.5e-05 24.4 3.2 1 23 363 385 363 385 0.98

7 10 6.1e-05 0.0079 17.9 0.5 1 23 391 413 391 413 0.97

8 10 7e-06 0.00091 20.8 2.1 1 23 419 441 419 441 0.96

9 10 4.9e-05 0.0063 18.2 4.5 1 23 447 469 447 469 0.99

10 10 0.0015 0.19 13.5 6.0 1 23 475 498 475 498 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2	2.6e+02	3.6	4.4	1	23	209	234	209	234	0.84
2	10	0.0057	0.73	11.7	6.0	1	23	240	262	240	262	0.99
3	10	0.4	51	5.9	3.9	1	23	268	291	268	291	0.94
4	10	0.0059	0.76	11.6	0.0	2	21	296	315	295	316	0.93
5	10	0.00015	0.02	16.6	4.0	2	23	335	356	334	356	0.95
6	10	5e-07	6.5e-05	24.4	3.2	1	23	363	385	363	385	0.98
7	10	6.1e-05	0.0079	17.9	0.5	1	23	391	413	391	413	0.97
8	10	7e-06	0.00091	20.8	2.1	1	23	419	441	419	441	0.96
9	10	4.9e-05	0.0063	18.2	4.5	1	23	447	469	447	469	0.99
10	10	0.0015	0.19	13.5	6.0	1	23	475	498	475	498	0.97

Sequence Information

Coding Sequence: ATGTCGGATGATGATGAACTACATTGCAATTGTCGTTTATGCGCTGAAAGTACACCGACTTCACAGCTTATATCGCCAGAGGACGATGTCGGATTGAACTCCAAATTAGCGATGAAAATGCAATGGATTAATATAGACATTTGTTCGAGCCTTCCAAACTCTATCTGTTATTCATGCTACGACGCATTACAACGTACTTGGATATTCCTTCGCGCAGTAAGAACAGCTCAAACAAAACTACAAgaaatttacattaaaaatctATCTGAAAACTCGACGTTAGATGTCAAAACAGATAGTGGAAAACCCGTCAATGAGGATTGGGAGAAATTTGAAGTCCCGAAGCAAGAAGTGAAGGATGAAGAAACGTCTAACGTTCCTAATATTCAGGTTGAAGTGGTGCCTATAGATGCAAGTACTTTATTGAATTTAGAATGCATAAAAACCGAAGCTGATGTTCCTACAGATGTTGATAATCATAATTCTGATGCCTTTAATACCACAGATAGCGATGATGAACCTCTATACTTGGCCACTAAGAAAAaaactaaaagaaaaaaaagacgaCATCACTCTGTCAACTCTGATACAATAGCTAAACAGCCCGAGGTCACATGGGATGATTATATGTGCCATTGTGCGGACTGTGATGCTCAATGTAGGAATATAGCATCACTACAACTTCATTCCTTACACATACATGCCCAATGTTGTACGTTCAAATGTTCCGACTGCTGTAAAGTGTTCACAAATTTTAAAACATTCATAAAACATGCTAAAACTCATAAGAAATCGCTACGATACCATTGTGATCTTTGCTGTCtaagttttattaaaacatCATACCTCAAAGCCCACCGTAATGATGTCCATAAGGATGACATGGTCTGTCAAAGCTGTGGCTTATCATTTGAAAACCTGGAACTACTCCAAGACCATCTACTTATGTATTCAAAGAATGTACGTACCGTGAAGAATGAAAATGTTGATTCCGAGGATTTGAAATGTGACCAATGTAGTAAAGAGTTTAAGTCTCGTAGTAATTTGCATCAACACAAACTGTTACACACAGAACGTCGTAGAGAATTCTCTTGTCACATTTGTGGTAAAATGTTCTTCACAAAAGGCACTTTAAGTACACACATGATGACCCACGAAGAATCCAAACCATTTAAATGTGAATTTTGTCCGTTAACATTCCGTGCTAGAGGGAATTTAACATCTCATATAAGTCTTCATTCAGATGCAAAGCCTTTTGTGTGCGAACAGTGTGGTAAAAGTTTCCGAGTCAAACGTCATTTGAAATCTCATTCTATTATACATACAGATCTAATGCCTTATAAATGTGATTATTGTAGTAAAACTTTCCGATTTAAAACTAGACTTAACCTACATTTAAGGCAACACACCGGTGCAAAGCCTTACCACTGTTTATTTTGTCAACGTGACTTCACAAACGGATCTAATTATAAGAAGCATATGAAACGCAAACATAATATAGACACGTCAAGGCGGAAATTTAATTCTATGTCAACACAGCTCGAGAATAATGAAGAACAAAACTTAGAGATCAGTGATGAGGAGAAAAATAAATCTTAA
Protein Sequence: MSDDDELHCNCRLCAESTPTSQLISPEDDVGLNSKLAMKMQWINIDICSSLPNSICYSCYDALQRTWIFLRAVRTAQTKLQEIYIKNLSENSTLDVKTDSGKPVNEDWEKFEVPKQEVKDEETSNVPNIQVEVVPIDASTLLNLECIKTEADVPTDVDNHNSDAFNTTDSDDEPLYLATKKKTKRKKRRHHSVNSDTIAKQPEVTWDDYMCHCADCDAQCRNIASLQLHSLHIHAQCCTFKCSDCCKVFTNFKTFIKHAKTHKKSLRYHCDLCCLSFIKTSYLKAHRNDVHKDDMVCQSCGLSFENLELLQDHLLMYSKNVRTVKNENVDSEDLKCDQCSKEFKSRSNLHQHKLLHTERRREFSCHICGKMFFTKGTLSTHMMTHEESKPFKCEFCPLTFRARGNLTSHISLHSDAKPFVCEQCGKSFRVKRHLKSHSIIHTDLMPYKCDYCSKTFRFKTRLNLHLRQHTGAKPYHCLFCQRDFTNGSNYKKHMKRKHNIDTSRRKFNSMSTQLENNEEQNLEISDEEKNKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -