Basic Information

Insect: Nudaria mundana
Gene Symbol: -
Assembly: GCA_963556515.1
Location: OY748297.1:2696428-2701948[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0053 0.69 11.8 3.4 3 23 46 67 44 67 0.90

2 14 0.00014 0.018 16.7 0.6 1 23 105 128 105 128 0.96

3 14 0.001 0.13 14.0 5.1 1 23 130 152 130 152 0.98

4 14 0.0025 0.32 12.8 0.4 1 23 188 210 188 210 0.98

5 14 0.017 2.1 10.2 0.4 3 23 238 259 237 259 0.92

6 14 5.4 6.9e+02 2.3 2.5 1 8 266 273 266 287 0.87

7 14 0.0031 0.4 12.5 0.1 1 23 294 317 294 317 0.92

8 14 0.0011 0.14 13.9 0.8 1 23 326 349 326 349 0.98

9 14 0.00012 0.015 17.0 0.4 1 23 354 378 354 378 0.97

10 14 3 3.9e+02 3.1 4.3 2 23 385 406 384 410 0.94

11 14 0.0058 0.74 11.6 0.2 1 23 411 433 411 433 0.91

12 14 0.00055 0.07 14.9 3.1 1 23 439 461 439 461 0.97

13 14 5.4e-06 0.0007 21.2 2.0 1 23 467 489 467 489 0.97

14 14 0.0015 0.19 13.5 4.5 1 23 495 518 495 518 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0053	0.69	11.8	3.4	3	23	46	67	44	67	0.90
2	14	0.00014	0.018	16.7	0.6	1	23	105	128	105	128	0.96
3	14	0.001	0.13	14.0	5.1	1	23	130	152	130	152	0.98
4	14	0.0025	0.32	12.8	0.4	1	23	188	210	188	210	0.98
5	14	0.017	2.1	10.2	0.4	3	23	238	259	237	259	0.92
6	14	5.4	6.9e+02	2.3	2.5	1	8	266	273	266	287	0.87
7	14	0.0031	0.4	12.5	0.1	1	23	294	317	294	317	0.92
8	14	0.0011	0.14	13.9	0.8	1	23	326	349	326	349	0.98
9	14	0.00012	0.015	17.0	0.4	1	23	354	378	354	378	0.97
10	14	3	3.9e+02	3.1	4.3	2	23	385	406	384	410	0.94
11	14	0.0058	0.74	11.6	0.2	1	23	411	433	411	433	0.91
12	14	0.00055	0.07	14.9	3.1	1	23	439	461	439	461	0.97
13	14	5.4e-06	0.0007	21.2	2.0	1	23	467	489	467	489	0.97
14	14	0.0015	0.19	13.5	4.5	1	23	495	518	495	518	0.97

Sequence Information

Coding Sequence: ATGGAGTTGGAGTCACCCTTACGGCTTGATGAGGGCGGGGAGTGGCTGGCCGATATAGAACTGCCCGATAATATAGATCAAGTCATAGCTGGCTGCCCTAAGCCGACCGCTATCGACCTGACCGGTGGGATCTTCTGCAATCTGTGTCATTATACATTTTCCAACAAGAAGGAATTCGACCGTCACTACACTGATCAACATTATATCATTCCTTCAGCTATAGTATACACTTGTGTAGCATGCCGTAAAGAGATAGCTCCGTATCCGAATTTTCGCAACCACTGTTACCTGAAGCATGTTGTTAAGGAGAGATTCAAGTGTGAACAATGCCCCAAGCAGTTTTCAAAACAATCTATTTTGAACAATCATATAAATGCTATGCATAACTTCAAATGTGCATCATGTCATGAAGAATTCTCATCCAAAAGTGAACTACACACACATAAAAATATGCACAAAAGAGATAAAGATAAGCCCCCATACCCATGTCACAATTGCTCTAAACAAATTGAAACTGTAGATATGTGTGAGATGCACATTGATGAACACTGCAAAATTTTGTACCCGTGCCCTATTTGCAATGAGACAACTGACAGTAAAATGGAGACCACAAAACATCTTACAAAACATTTTGATGAAGTAATAACAAATGAATTTGAAGAAACAGAAATCAGTGCCGATAGTTCAGTAGATATGCTCGGAGGGGTACTTTGCTCATACTGCGATGAATTGTTCAAGAACAGAGTGGATTTTGAGCAGCATTTCATCAATGAACATTCTGACAGCGATATTATTTACTCTTGCAACATTTGTGGGAAACAACACCAAAAATACCATTCATTTGCCGACCATTGCTACTCTCATGTTGCTAAAAACAGATTTGAATGTATGGAGTGCGGCAGACTGTTCCCTCGACTATCCCTACTGGTGTTGCACACGGAAGCATTCCACAGCGGCGACTACACTCTCAAGCCATTCCGCTGCGCTCAGTGCTCTCACGCCTTCGGTACAGCACAACGTCTCAAGGAGCACATGCGGATTGTACACACGCTCGATACCTACTGCTGTCCGGAGGAGGGGTGTGATATCACGTTCGCGACGTCCCGCGAGCTGGTGCTCCACCAGCGCCAGCACCGCATGGACGGCGGCCTGTACTGCCACTCGTGTGGCCTGCAGTTCCGCGAGCTGTCCGCCTGCCGCGCCCACCTGGATGTGCACCGCCGCAAACACTTCGCCTGCCCGGTGTGCGACAAGCAGTACCGCGAGAAGTACCTCATCCTCAAGCACATCCCCACGCACTTCGAGTCCGTGCTCCACGTCTGCAAGGTCTGCGGGAAGGTGTTCAACGCTAGACATCGCCTCGTCGAGCACACCAAGACCCACTCCGAGGTCCGACGTCACGTGTGCAGCCACTGCGGTAAGGCGTTCATGAAACCCTACCAGCTCGAGCAGCATCTTAACATCCACACCGGCTCCAAACCTCACAAGTGCACCATGTGTCCGAAAACGTTCGCTAGCCTTCCGAACTGCACTAAACATCTCAGGAAGATACACAATATAGTCAAAACTAAATTGCAAAACCTCGTGGACGAGTCCAGggaaattccaaaaaattttGATCTGGTTAAAAATACGAAAATTGCCAAGAAGACTGATTTCGATGCGAAAAGCGAGTCGGGAATCGAGTCTATCAGCCCCGAGATGTCACTGGACACGTACATATTTGGTGAGTCGGACGACAGCACGATGGACAGCTTAGATCCGGCCAACATTGTGAAGGACTGGTGCATCTTGAACGAGAACTCTTTGGTCGACAATAGTCCACATTATACAGATATGCAAACTGTAACAAATGCTACATACGAAACTGAACAAAACACAAACCCGGTGGAATACTCAATGCTATCCGAGAACACTATACTACTTGAGTATGGGCCAGAGTTCAACATGGACGATGGCATCCACCTCGACGACCACTACCTGCCCCACATTGACCCGCTGCTCACCATCAAGCTGCCCACCCCGGCTCTACCCACGGCCGCTACCATTCCTGAACCAAACTGGGAGCCTCTAATCACTAAGGTATACCACTCAGATGACGTTAATAGAATTTCAATTGTGAATACAGATATATACTAG
Protein Sequence: MELESPLRLDEGGEWLADIELPDNIDQVIAGCPKPTAIDLTGGIFCNLCHYTFSNKKEFDRHYTDQHYIIPSAIVYTCVACRKEIAPYPNFRNHCYLKHVVKERFKCEQCPKQFSKQSILNNHINAMHNFKCASCHEEFSSKSELHTHKNMHKRDKDKPPYPCHNCSKQIETVDMCEMHIDEHCKILYPCPICNETTDSKMETTKHLTKHFDEVITNEFEETEISADSSVDMLGGVLCSYCDELFKNRVDFEQHFINEHSDSDIIYSCNICGKQHQKYHSFADHCYSHVAKNRFECMECGRLFPRLSLLVLHTEAFHSGDYTLKPFRCAQCSHAFGTAQRLKEHMRIVHTLDTYCCPEEGCDITFATSRELVLHQRQHRMDGGLYCHSCGLQFRELSACRAHLDVHRRKHFACPVCDKQYREKYLILKHIPTHFESVLHVCKVCGKVFNARHRLVEHTKTHSEVRRHVCSHCGKAFMKPYQLEQHLNIHTGSKPHKCTMCPKTFASLPNCTKHLRKIHNIVKTKLQNLVDESREIPKNFDLVKNTKIAKKTDFDAKSESGIESISPEMSLDTYIFGESDDSTMDSLDPANIVKDWCILNENSLVDNSPHYTDMQTVTNATYETEQNTNPVEYSMLSENTILLEYGPEFNMDDGIHLDDHYLPHIDPLLTIKLPTPALPTAATIPEPNWEPLITKVYHSDDVNRISIVNTDIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -