Nmun033127.1
Basic Information
- Insect
- Nudaria mundana
- Gene Symbol
- -
- Assembly
- GCA_963556515.1
- Location
- OY748309.1:5081318-5090993[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0025 0.32 12.8 0.1 1 23 200 222 200 222 0.95 2 10 4.1 5.2e+02 2.7 0.1 2 20 250 268 249 270 0.87 3 10 3.7e-05 0.0047 18.6 0.3 3 23 295 315 293 315 0.96 4 10 2.4e-06 0.00031 22.3 0.2 1 23 319 341 319 341 0.98 5 10 0.19 25 6.8 0.7 1 23 346 369 346 369 0.94 6 10 0.26 34 6.4 0.5 1 23 375 398 375 398 0.92 7 10 6.9e-05 0.0089 17.7 0.7 1 23 405 428 405 428 0.98 8 10 2.4e-05 0.0031 19.1 2.3 1 23 434 456 434 456 0.98 9 10 0.00012 0.015 17.0 6.4 1 23 462 484 462 484 0.98 10 10 3e-06 0.00038 22.0 1.0 1 23 490 512 490 512 0.98
Sequence Information
- Coding Sequence
- ATGGATACGGAAATTATGGTGGAGGCATTTCCAATGATAGGCATGTGTAATTTGTGTCTTGAGGAAGGCGTTGTGAAAAGTATGATTataccaaaccaatataatggTAATAGTGAAATTTACTCCGAGATGCTGCTGAAATGCCTTTCAATCGACATGGCATCCATCCAACTTGGTGACAGTAAACAACTGATATGTAATATTTGTATCTCCAAACTGAGGGACTGTAGTCTGTTCAAAGAGCAGGCTCTGATGTCGTTAAAGACTTTGGAAAATACAGTGAGACAAAATATCGAAGATAAGCCACCTTCAGATGAAGAAGTAAAGAGAGAGTATTCTGATACACCATATGACTTAGATGATGAATTCcatgataatgatgatgatgttctAGAAGCAGATTTACATACCACTGTGATCAAGAAAGAAgaacaaaaaattaaattcacacgtaaaacaagaaataaaacggtaacatcaaaaaaaattaaaataatcaaaTGTTCATCTTTGGCCAAAAAAAAACCTGACTTAACGGAAACGGACACAATGTTAAAACTAGGACTTTTcccgtttaaaataaaaaaaaatggcaatTTTTCCTGTCCAATATGTCCGGAGAAATCGACAAATTTAGACGATATTAAAAATCATATAGTCCAACAtagtaaaattaatataaatattgcttttaaaaatatgaGTTACTCGAACTCGCACAGATTTTCCAAGGTCCTAATGACACTGAGATGTAAAATTTGCACCACAGATGTTTTAAATTACGACGAATTGAAACAACATGTTGAAAATTGTAATCGATTGAAATTTACAAACCGCAACTGGAATAATTTACCATTCAAACTGGAAAAAGATCAACTTGATTGTCCAATatgtaaaaaaacatttttaaactaCGTCAACTTGAACACACATATGAATGTACATTACCCTAATTATATATGTGAAAGTTGTGGCAAAGCGTTCGCGTCTAAAGCTAGACTTCGAGGTCATATGCGTACTCATGAAATAGGGAATTTCCCGTGTAGATATTGCGAGCAAATTTTCGATAGGGTTACCAAAAGAGAAAATCACGTTTCAAAAGAGCATAAATCCGGTATACGGTATGCTTGTAAGCGTTGTAAAATATCTTTAACATCATTTTATGCTCGGCAAAAGCATTTAGCTGAGGTACATAATGAAGAGTTAAAGAGATACAAGTGTAAAGCATGTCCTCAATCTTATATAACCCCGGGACATTTATCAAGTCATGTTCGAAGAGATCATTTAAATGAACGCAACCATAAGTGTGATAAATGTGACTTAgcattttatacaaaaaatgcCTTAAAAATGCATATGATCAAGCATGATGGTGAAAGAATTCATACTTGTCATGTCTGTCAGAAGTCATATCAGAGAAAAAAAACTTTGAGGGAACatttaagaatacataataatgataAAAGGTTTATCTGCCCTGTTTGTGGGCGGGCGTTTACACAGAAATGTACTCTTAAAGGTCATTTGAAGGTTCATGAGAGGAAAACTGATGATGACGACTTGGTTGCTCAACCTTTGCATTCTATATAG
- Protein Sequence
- MDTEIMVEAFPMIGMCNLCLEEGVVKSMIIPNQYNGNSEIYSEMLLKCLSIDMASIQLGDSKQLICNICISKLRDCSLFKEQALMSLKTLENTVRQNIEDKPPSDEEVKREYSDTPYDLDDEFHDNDDDVLEADLHTTVIKKEEQKIKFTRKTRNKTVTSKKIKIIKCSSLAKKKPDLTETDTMLKLGLFPFKIKKNGNFSCPICPEKSTNLDDIKNHIVQHSKININIAFKNMSYSNSHRFSKVLMTLRCKICTTDVLNYDELKQHVENCNRLKFTNRNWNNLPFKLEKDQLDCPICKKTFLNYVNLNTHMNVHYPNYICESCGKAFASKARLRGHMRTHEIGNFPCRYCEQIFDRVTKRENHVSKEHKSGIRYACKRCKISLTSFYARQKHLAEVHNEELKRYKCKACPQSYITPGHLSSHVRRDHLNERNHKCDKCDLAFYTKNALKMHMIKHDGERIHTCHVCQKSYQRKKTLREHLRIHNNDKRFICPVCGRAFTQKCTLKGHLKVHERKTDDDDLVAQPLHSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -