Nmun033160.2
Basic Information
- Insect
- Nudaria mundana
- Gene Symbol
- -
- Assembly
- GCA_963556515.1
- Location
- OY748309.1:5296703-5314532[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.012 1.6 10.6 0.3 3 23 248 269 247 269 0.97 2 16 5.6 7.2e+02 2.2 0.1 2 23 295 317 294 317 0.87 3 16 8.7e-05 0.011 17.4 1.7 1 23 339 361 339 361 0.98 4 16 0.0011 0.14 14.0 0.1 1 23 365 388 365 388 0.98 5 16 0.046 6 8.8 0.6 2 22 394 414 393 414 0.95 6 16 0.6 78 5.3 4.6 1 23 421 444 421 444 0.95 7 16 0.082 11 8.0 1.1 1 23 451 474 451 474 0.94 8 16 0.0019 0.24 13.2 1.0 2 23 480 501 479 501 0.97 9 16 0.36 46 6.0 0.1 2 19 632 649 631 651 0.94 10 16 1.1e-06 0.00015 23.3 0.9 1 23 657 680 657 680 0.94 11 16 0.091 12 7.9 0.1 3 20 686 703 685 705 0.92 12 16 0.029 3.7 9.5 0.3 1 23 712 735 712 735 0.88 13 16 0.0016 0.21 13.4 1.5 1 23 744 767 744 767 0.94 14 16 9.6e-05 0.012 17.2 0.1 1 23 772 794 772 794 0.96 15 16 0.0026 0.34 12.7 2.2 1 20 800 819 800 822 0.94 16 16 0.0086 1.1 11.1 1.1 6 23 833 851 828 851 0.93
Sequence Information
- Coding Sequence
- ATGGCCAAGAGTATAGAATGGCGACCCGGGCCTACTGTTTGCCGTTGTTGTTTGACGGAAGGTTGCTACAAAGACGTTTCCACAGAATATTTTTGGATGGGAAAGCGCGAAGTGTATGCCGAAATGCTCTTGGAGGCCTTTAGTGTTACGATTGAATACTCCCAATCAGGTGGTCCTAACAGCAATAGTCGGCTGATCTGCGAACCATGTATTTCTCGGTTAAGAGACGCCAACGACTTTAGGAAACAGGTGCTCGAGTGTGAAAAAACCTTTATGCGGCATTTAGTCCCTGGCCCCTCAAGGGGTGGGGGCGATTTCGTAGAGCTGGATGTGGACGATCCCGTTGACAATATGAAGCTGGAAGGGATCAAGTTAGAAACGAGAATCAACTACGATGACTTTGATGACTTGGATTTTAATGAtgacgacgatgatgatgattTGGATGATGAACCTCTTACAAAACTAGCAAGCAAATTACCTAAAAAAGAGTCCGTCGACGTAACTGATTTATTAGACAACAAAAAGGCGGCTGTCAAACGAAAATGCACTACTAAAGTAACGGCAGCACCACCGAACAAGGCAAAAAAGAAAGTCAGAAAAGATCCAGCGACTGAGGCAGCGTCTAAACCGgagaaaaaaaagaaagCGGAAAATTACGATGCGACGCGAGCAAACGCCGTGACGATCATAAGCAATACAACAGCTTATCCGTTTAGAGTGAACGACAAGTCTATATTGTGCGTCTACTGTCATGAGCTGTATGAAGATCCGGATTTATTCCGGCAACATATGGAGACAGAACACGACTATTTCAGCATTAAAGTTGCATTCCATCATCTACCGAAAAATGAATTCATCAAAGCAGATTTAACTAACTTGAGATGCAGAACTTGCAAAGAGCAATACGAGAACTTGGATATGGTATTAGACCATGTAGCCGAGGTCCACGGGAAGAAGACAGATCCAAATGGCAAATTAGGCGTGATGCCTTATTATTTACAAAAGGATGTGTACAATTGTGCTGTTTGTGAAAAAAACTTTCCGACGCTATTTCATTTAAACAGACATACGATAACACACTTTTTGAGCTACGTGTGTGATGTATGCGGAAACAGCTACGTAGCAACAACAGGACTCCTCAAACACATGAGATCGAAGCACCAAACTTATGAGGTATCCTGTAAGAGATGCCGAAAAGTATTTCCTACTATGGAGGCGAAAGAGAAACATAGGCGAACCGAAAAAACTTGTATGCCGTACTGTTGTCCTAAGTGTAACGAACGATTTCTCGATTGCAAGTCCAGAAAACGGCATTTGGAAGTTGCCCATGGGCTGTCCAAAAAGACGTATAAATGCGTCAAGTGCAATATAGATTTTGCAAATGAAAATTCTTATTACATACACTTCAAGCTGAATCATTCGGAGGATTGTGTCGTTTGCAAATTTTGTGGTGGGAAGTTCGTTTCTGAGTTTAGGTTGAAGAGGCATATGTCGAAACATACTCATTTGTTTAGTGAGTTCGATCCCTTGGTCGAAGCGCGACAAAACGCTAAGGTAGTATTGAGGTACTCTACGGCGTATCCGTTCAGGATTCCCGCCAATGAGATGGTGTGCGTTTATTGCTGCGAGCCCCACGAGGACCCTCAGAAGTACAGGGACCACATGAAACGTGACCATGACACGTTCAACGTCGACACAGCGTTCGCTCACACTGTCAGCACATCAGAGTACATTAAAGTCGATTGCACAGACCTACGATGCAGACTCTGTTGCGAACAATACGATACAATTAATTCAGTAGCCAAGCACCTTCATTTAGAACACGACAAAAAAATTAATCTAACAGCAGAAGTGGGTTTGCAAATATTCAAGTTGGGACAGGAGCGATGGGTCTGTGCGGTCTGTTCTCTAAAATTCCCTTCTCTAAGAGCTCTTAGTAGACACAACAGTTGTCATTATCATAAATACACGTGTGAAACATGCGGTAAATCTTACATAAGTAAAGAAAACTTAAATAAACATATTCTATTTAGTCACTCAGAGGAAAAAATATGTGTAAAATGCCGAAAATCGTTTCCTAACAGTGAAGCTCGAAGATTACACATCTTGGCAACTAAACGATGCTGGCCTTTTGCGTGCAACTTATGTGGCGAACGATTCGTGTCTAGAAAACTCAAGATTGTACACAAAAGCGAAGTCCATAGTGTTGGTCTAgcgaaaaaatctcataaatgtCCAGAATGCCAACAGTCATTTGAAGAATGGAGGCAGTACAGATCTCATTTTATTATTTCTCATACAGATTCTAATTACGTATGCCCATTTTGCGGTATTAAATTCGATACTAGAGGTGCTCTCGAGAGTCATAGGGTCATCCACACAAAGGAAAAGATATTCCATTGTACTGTGTGCACGAAATCATTTTTGAGGAAGAAGAATTTAGCTCAACACATGTGGATCCACAGCGAGCACAAAAGGTTCCAGTGTATACCGTGCAATAAGCAGTTCAATCAGAGAGTCAGTTGGAAAACTCATATGAGATCGTACCACCCGGAGTTGGtggatttttaa
- Protein Sequence
- MAKSIEWRPGPTVCRCCLTEGCYKDVSTEYFWMGKREVYAEMLLEAFSVTIEYSQSGGPNSNSRLICEPCISRLRDANDFRKQVLECEKTFMRHLVPGPSRGGGDFVELDVDDPVDNMKLEGIKLETRINYDDFDDLDFNDDDDDDDLDDEPLTKLASKLPKKESVDVTDLLDNKKAAVKRKCTTKVTAAPPNKAKKKVRKDPATEAASKPEKKKKAENYDATRANAVTIISNTTAYPFRVNDKSILCVYCHELYEDPDLFRQHMETEHDYFSIKVAFHHLPKNEFIKADLTNLRCRTCKEQYENLDMVLDHVAEVHGKKTDPNGKLGVMPYYLQKDVYNCAVCEKNFPTLFHLNRHTITHFLSYVCDVCGNSYVATTGLLKHMRSKHQTYEVSCKRCRKVFPTMEAKEKHRRTEKTCMPYCCPKCNERFLDCKSRKRHLEVAHGLSKKTYKCVKCNIDFANENSYYIHFKLNHSEDCVVCKFCGGKFVSEFRLKRHMSKHTHLFSEFDPLVEARQNAKVVLRYSTAYPFRIPANEMVCVYCCEPHEDPQKYRDHMKRDHDTFNVDTAFAHTVSTSEYIKVDCTDLRCRLCCEQYDTINSVAKHLHLEHDKKINLTAEVGLQIFKLGQERWVCAVCSLKFPSLRALSRHNSCHYHKYTCETCGKSYISKENLNKHILFSHSEEKICVKCRKSFPNSEARRLHILATKRCWPFACNLCGERFVSRKLKIVHKSEVHSVGLAKKSHKCPECQQSFEEWRQYRSHFIISHTDSNYVCPFCGIKFDTRGALESHRVIHTKEKIFHCTVCTKSFLRKKNLAQHMWIHSEHKRFQCIPCNKQFNQRVSWKTHMRSYHPELVDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -