Nmun039753.1
Basic Information
- Insect
- Nudaria mundana
- Gene Symbol
- -
- Assembly
- GCA_963556515.1
- Location
- OY748315.1:7615331-7666444[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.2 1.5e+02 4.4 0.7 2 19 489 506 488 510 0.90 2 18 0.0092 1.2 11.0 0.2 1 23 520 543 520 543 0.95 3 18 0.59 77 5.3 1.2 1 21 645 665 645 666 0.92 4 18 0.037 4.7 9.1 3.8 2 23 727 748 726 748 0.95 5 18 0.36 47 6.0 1.5 1 23 760 784 760 784 0.90 6 18 0.00013 0.017 16.8 0.3 2 23 791 814 790 814 0.97 7 18 0.072 9.3 8.2 0.2 1 23 820 842 820 842 0.93 8 18 0.0035 0.45 12.3 2.9 1 23 848 870 848 870 0.98 9 18 0.22 28 6.7 0.1 2 19 881 898 881 901 0.89 10 18 0.031 4.1 9.3 0.2 1 23 980 1002 980 1002 0.97 11 18 2.1 2.7e+02 3.6 7.2 1 23 1009 1031 1009 1031 0.95 12 18 0.0014 0.18 13.6 1.8 1 23 1072 1095 1072 1095 0.95 13 18 0.00038 0.05 15.3 0.7 1 23 1102 1125 1102 1125 0.98 14 18 0.5 65 5.5 0.2 2 23 1146 1168 1145 1168 0.95 15 18 0.0011 0.14 14.0 1.5 3 23 1191 1212 1190 1212 0.94 16 18 0.00031 0.04 15.6 1.2 1 23 1244 1266 1244 1266 0.96 17 18 0.00013 0.016 16.9 0.1 1 23 1272 1294 1272 1294 0.97 18 18 0.0004 0.051 15.3 0.7 3 23 1302 1323 1300 1323 0.95
Sequence Information
- Coding Sequence
- ATGTCAGATCCCCAGACTCCAATAGTTATATACATGGAAAATGACACCGGCGAAGATGTTGCACTTAAAATTGATCCAGATGATAATTTCGAGACATTTCTTGACAAATCTAAATCAGTATTAGGCTACGATGTAGACCTAAACTCCATAACAAAGAACCAACCAGTATCGCTAACTGAGAACGTGTACCAATACCTTATGAACGCAGAACAGAATATTCAACCAGAAGCTCTATCACAAACGTTTGACCCAATGTTGGGCACCAACGATGGTGCTGACGCCAACGATTTAGTCTACATTCTCGATGATGGCACTCAAATAAGAGCATCacaaatacatttcgataatgaTGACCCATTAATCGATTTAACAGCAGAAAAAATACCATTCGTTAAATACGCTGAGGTATCTGATGATATCGATATCACGGATATCGATATTGAGGAAActaaaaagattaatatcatagATAGTCCAGTTTCAAGATGGTCTAGTACAAATTCCAGTCCAAAATGCAGTTTCGTTAATTCTTTACCATTCAAACTTGTATGTAACAACACATCCGGCTTCGAAGCACAATTTACTAAGTACTTAGAAGCGAACGCAACGAAAACTTACGCTACTTTAAACCCAGTGACTAGTAGGAATAAATCTCCAAAAAGTTTGATCAAGGATAATTTTAAGAATTTCGATAGTTATCAAAGGAATGATAGTTTATCGTATACAAGGGAAGATATATTGAATATGTTTAAGGATTCGCCTATGACGTCATTGCCTTACGATCAGGGATATAGTGAGAGAAGGCATGTTAGGAAGACGGATCCTTCAAGACTGGTCCATAAAAGTTGGAACAAACCCGTGACTTATGTAGACATTGATGGCGTGCTAATAGGCGAAAGCGAAAGTCAAATCTGTTTCATTTGTGGTAAACATGTTGATAATAACGTGGACAAGCTTTATTTGTTTGACAACGAAGATCAGCGTGTCCATAGATGTTCGCCGCAAAAGAAAATGTCAACCCAATTAAAAATTATATGCGAGTGTTGTTTAAACGAAAATTTTCGACCGTGCCGTATGAAAAGTGCTAATCAATTTTTAAACCCAGATGAGTATCTTGTTATAAGGAATAATCAACAATATATATTTCAGAAGATTAAGAATTTTAGTTTCGCACTAATTAGTAAGAAAGATACGAAAGAAACGAAGAAATATAAAGAAGAGTTTGTTAAAGTCGAAATAGGTTCTGATGGAGAGATTATAACTAAGCCCATAGACAACGATGTTAGGTCCGATGACGTCATCATAGTGAAGGATGACAAGAAGGAAGGCGGTTCTAGTGACGTGGAAATTATTGAGCCGGAACCGGAAATAGATAATTTCATAGACAATCTAGAGGATGCGGATGAGGATGTGAAAGAGTTTTTAGGCAAATATTCCTGTGATACAAATGAAGTTGCTGAACTCAAATGCAGGTTTTGCGAAACAGTGTTTTCTGATGTGAGCGAAGTTATGGAACATTGTGAGGCCCATAAACACGATTTAGAGGATGGGGAAGTGTTCCCATGCCCTCTATGTAACTATGGTTATCCACATTTGAAATGGTTGAAAGGTCACCTGAAAGCCGCGCACGAGAAGAAACCCGCTAACAGTGGTATACTGAAAGTGGAAGTTAAAGatgAAATATATCCGAATTCTCTACAAGTGACTTCGCCTGTAGCGACTCGCACGCGTAGTGCCAATAAAAAGAGTGACGAAGAAAGCAAAGAGCCACTATTGATCGAGACAGAAGTGAAACAAGAGGTCCTGGACAGCAGTGAGGATGAGATATGGATAGTGCAGACTGCTGATATGGAGTCCAGCCAGGATCTGGAGAAACTGTTCGCCGGGAACAATAAGAACAAAGATATAAAACCTACTAAACCGGAGAGAAGCTTCAAGTGTATTAACTGTAGTCAAATATTTACAACCGCTGAGGGCTTATCATCGCATCGTTGCAAACGAAAAGGGAGGAAACGGAAGGATAAAGACGACAATCTTATATGTATACCTTCTGCAGAGGACTTTTTAAAGAGGGCACAAGGCCGCCCATGGCCCAACGAAACTGTCAACAATGATTTACTTGTGGTTCGTTCCCGTAAGCGACGCAACAAGCCGGTCATCTGGAACCCACAGATAGTCACCTGCCACAACTGTAATGAGTCATTTACATCTAAAGTTCGACTCAAATTTCATatGCAATTCCACGAAACTTCAAACGCTATGATGTCAGATGGTAGATATGTATGTACAGAGTGTACTGGAACCACCTTCTCCACGGAGACGGAACTCTTCGACCACGTGCACTTTCAGCATGACAAGCTGAAGAGATGGCAGTGTCCGGTCGAGGGCTGTGGGAAGACATTCTTTCTgagGGCAACACTGACGAAACACAGtcgcacacacacagacacacgcaGGTATGTGTGTGTCACTTGTGGTAAACGGTTCCTGGACAAGCAGACCCTGGATGAGCATGGAGTCACACATTTACAGATAAAGCCGTTCCAGTGTCACATCTGCCTGAAGCAGCTGACGCGTCGCTCTCGACTGCGCATGCACGTGCGCGCGCACGAGGAGGAGCTCGCGCCGCGCCTCGTGCGAGTGTGCGCCGTGTGTCACCGGGCCTTCCGCGACGCCGGGCACGCCATGGATCATGCAACGAAATCCACGGAATGCATAGAGGCTTACGCCAACGAGCTGAAGCAGGAAACCGAGGAGATGATGGTGCAGTTGTCCCCGACCAGTGGTTTAGTGCGACACACTGTGCAGATAATCGAGTCCCCAAAACTATCGAAACCCATTAAACGTCAGGTCTCAAACGAAGTGGGGGAGCCTTTACTGTCCGTGTTGGCGGACGAGGCCCGCTCTCTCATACGGGTTGTGGAAATTGAAAAGGCTTTTAGATGTGAATATTGTGAGGATGTATTCTATCTGGAGTCAGGTTTGAACAATCACCGTGCGATACATAAAGGCGTGAAAAATCCCTTCACCTGTCATATATGTAAAGTAAGCTTCGCTACTTATTCAAGGTGTACGACCCACAAGACGACCCACGGCTTCTACAAGCGTGCCCTGGTGGACGCCAAGAAGCAAGCCGATGGGTCCACGCAGGGCAGCGACCCTCCGTCAGCCACCGGCATACTGGGCTACGGGGACTTCCCCGTCGTCAAACATTTCTTGTGCGAGGATTGCGGCCGTTCGTATCTACACTGGACATATTTACAAGTACATCGGCGTATGAAGCACGCTAGTGAAAATTTCTTGTACAGATGCAGTCAGTGCGAAATGACGTTTCCTAACAGTTGGAGTTTGGCGTATCACCGCAAGAAGGTTCACGGCAAAACGGGTCCGTACGATCCAGGCACCAGTACTAAACCCAGAGAAGATTACAGAATACCATGTCGGGACTGCGAAGATGTACTACCAAACAAAACAGCGTTATACAAGCATAGGAAGAAGGAACACAGCGATATGTCACTCACTAGAATTAATCAAGGCACATTCAGCGGTGAGACGCGTATATCAAACGCGTGCCCACATTGCCCGGCGACATTCACACACGCACCGGATCTACATAAGCATGTCAAAGACGTACACAAAGTGGACATGGGCTCCTGCGGCTCCTGCAAGTCGTTCACGTCCCGCAGCGAGCTGCCCCCCGGACGTCATGCGTCCTGCCCGCGGCGCCCGCACGCATGTCCCGTGTGCGGACACGCGTTCCGCACGCTCTCCATGCGGAATGAACACTTGAGGGTACACACTGGGGAGAGACCGTTTCCTTGTGACGTCTGCGGAGTTGCTTTCCGCAGATCCACAGCGATGCGTAACCACCGTCTGATCCACAGCGGCGTGCGAGCCTGGGCGTGCGGCAGGTGCCCCAAGAGGTTCCGGATACGCTCCGACCTGAGGACACATCTCAGGCTTAAGCATCCCGCTACTTTACTCGTTTTTGAGGTACGTTTACTCCCATCAGTCATCCCCTGA
- Protein Sequence
- MSDPQTPIVIYMENDTGEDVALKIDPDDNFETFLDKSKSVLGYDVDLNSITKNQPVSLTENVYQYLMNAEQNIQPEALSQTFDPMLGTNDGADANDLVYILDDGTQIRASQIHFDNDDPLIDLTAEKIPFVKYAEVSDDIDITDIDIEETKKINIIDSPVSRWSSTNSSPKCSFVNSLPFKLVCNNTSGFEAQFTKYLEANATKTYATLNPVTSRNKSPKSLIKDNFKNFDSYQRNDSLSYTREDILNMFKDSPMTSLPYDQGYSERRHVRKTDPSRLVHKSWNKPVTYVDIDGVLIGESESQICFICGKHVDNNVDKLYLFDNEDQRVHRCSPQKKMSTQLKIICECCLNENFRPCRMKSANQFLNPDEYLVIRNNQQYIFQKIKNFSFALISKKDTKETKKYKEEFVKVEIGSDGEIITKPIDNDVRSDDVIIVKDDKKEGGSSDVEIIEPEPEIDNFIDNLEDADEDVKEFLGKYSCDTNEVAELKCRFCETVFSDVSEVMEHCEAHKHDLEDGEVFPCPLCNYGYPHLKWLKGHLKAAHEKKPANSGILKVEVKDEIYPNSLQVTSPVATRTRSANKKSDEESKEPLLIETEVKQEVLDSSEDEIWIVQTADMESSQDLEKLFAGNNKNKDIKPTKPERSFKCINCSQIFTTAEGLSSHRCKRKGRKRKDKDDNLICIPSAEDFLKRAQGRPWPNETVNNDLLVVRSRKRRNKPVIWNPQIVTCHNCNESFTSKVRLKFHMQFHETSNAMMSDGRYVCTECTGTTFSTETELFDHVHFQHDKLKRWQCPVEGCGKTFFLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELAPRLVRVCAVCHRAFRDAGHAMDHATKSTECIEAYANELKQETEEMMVQLSPTSGLVRHTVQIIESPKLSKPIKRQVSNEVGEPLLSVLADEARSLIRVVEIEKAFRCEYCEDVFYLESGLNNHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRALVDAKKQADGSTQGSDPPSATGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHASENFLYRCSQCEMTFPNSWSLAYHRKKVHGKTGPYDPGTSTKPREDYRIPCRDCEDVLPNKTALYKHRKKEHSDMSLTRINQGTFSGETRISNACPHCPATFTHAPDLHKHVKDVHKVDMGSCGSCKSFTSRSELPPGRHASCPRRPHACPVCGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRSTAMRNHRLIHSGVRAWACGRCPKRFRIRSDLRTHLRLKHPATLLVFEVRLLPSVIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -