Nmun036748.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nudaria mundana
Gene Symbol
-
Assembly
GCA_963556515.1
Location
OY748312.1:1684098-1688218[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.07 9 8.2 0.2 1 23 232 255 232 255 0.93
2 16 0.0013 0.17 13.7 5.9 1 23 260 282 260 282 0.98
3 16 0.0019 0.25 13.1 1.1 1 23 312 335 312 335 0.95
4 16 0.00025 0.032 15.9 1.1 2 23 395 417 394 417 0.96
5 16 0.001 0.13 14.0 1.1 1 23 423 446 423 446 0.93
6 16 0.0098 1.3 10.9 0.4 1 21 449 469 449 470 0.93
7 16 0.054 6.9 8.6 0.2 1 23 478 501 478 501 0.90
8 16 0.0063 0.82 11.5 0.1 2 23 542 563 541 563 0.96
9 16 0.00041 0.052 15.3 2.0 1 23 569 591 569 591 0.97
10 16 0.00022 0.028 16.1 0.6 1 23 627 649 627 649 0.97
11 16 0.055 7.1 8.6 0.8 3 23 655 675 654 675 0.93
12 16 0.00027 0.035 15.8 0.6 2 23 694 716 693 716 0.96
13 16 0.0025 0.32 12.8 3.4 1 23 722 744 722 744 0.98
14 16 0.0018 0.24 13.2 6.1 2 23 751 772 750 772 0.96
15 16 0.0001 0.013 17.2 2.4 1 23 778 801 778 801 0.97
16 16 1.1 1.4e+02 4.5 1.8 3 23 808 829 808 829 0.98

Sequence Information

Coding Sequence
ATGGAGGTCCCAGCACAAAATCAAAATTCTAATAATTGGGAGTGGATGAAAAATAAACTTAGTGTGATATGGTCATCACAAAAGTTCTGTGGCCTATGCTTGGAGAACACTATCCGCAATTTGTGTTCTGTAGACATGGAGTTAGTTATCAACAAGCAAACATTCTCAAGATGTCTACGAGATATAATTAACTATGTTTTTAATGATGACGTTGAAAATTTGATGTCAAGCCTATTCATATGTGACGCTTGCATTGAAAAAGTTATACAGTCATACTTGTTCATACACAATACGAAACAGTTATTCAGAATAATTAACAACTGTGTTAACGATATTAATTCTAAAGTGATAGATGTCAATTATCAACTTAACAACTCTTTGAACTGTGAGAATGCTAATGTCATGATAGTTGTAGAATCTGACATAGATTTGTACAAGACTGTTATAGATACAAAAATGACTGAAATAGTTCCAACTGCTTTCCCCATAGCTATGAAACAAGAACCAGAGATTGTTATAGCAAAAGTTGAGAGTCTCATACAAACAGCAGCAAATCAAAAGGATAAAGAAAACTTTTTATATGACAAACCTATTATAAAACGGGAAGATACcccaaatattattttaaaagaagGTCATCTTGAAATACAACCTCTTAATGCACCAAGAAATCTTAAACCACGTTATAACACCTACGCATGTGCAAATTGTCCAGAAATATTCACGATATACAGATCTTTGAAAGAACATGAAAAAGCTAAACACAAGACATCTGTATTCTGTTGTAATTTGTGCAATAAGATGTACAACACTCGTCAATACTTAAATTTACATTACAAGACACATGAAAAAGCGAAATGTAAATTTTGTCAAGTGATTCTACCGGAAAATGAGTTAATGGAACATTTAAGAGCTAACCACTTGAACTTAGTGTTCCCTTGCAAGTTCTGTGACTTAGTATATTACACTTATGATTCTTTAACAACACATTTCAATATAAGTCATttagtaaacaataaaaatttaaaatcacaGTGTAGAATGTGTTTAAAAAAGATTGAAGATGGtgacaaaaaacacaaatgcaAGTTCGCTTGTTCCGAATGCTTTGTAATGCCATGTGTGCATTATAAGTACTTGATGTCTTATAGGGAGCAAATATTGAACCatgctaataaaataaaatgtatggaTTGTGATTATGTGACTCGGAGAAAGGAGCATCTAATTAGCCATGTGAATCGAGAACATTTAGACCATCATCCATTTACATGTGCCGACTGCGACCAACAGTTTTATACAAAGTTAAGCTTGAGGACACATATTGTACAGTTCCATCAAGAGTTCAACTGTAAATACTGTGATTCCCAATACAAAGATAATGACAGTTTAGTGATACACAAAAATGTTTGCAAATCAATCATCCGAGTGTTCAGCTGTAACCAGTGTGCAGCGTCCTTTGACGTTCAGGAGGAATTGACAATTCATGAGTATCTAAGACACAGTGAGACTGTACATGCTTGTAAACTTTGCAAGAGTAGgttcttaacagttttagaACTTGAGGAACACCATGCTAGAGTCCATGGTGGGATCCAATGGAAGAAAAGGCGGAAACATATAGAATGTTCCCTATGTGATATCTTCTTTAACAATATCAAAGAATTAGTCCAACATGAGAAAATCCATACCCAAAATGAATGGTATCCATGTAAAAAATGTCCAAAGAAGTTTAAGACTCTTATAAAGTTGTATACACACGGCCAGAGACATTATACAGATAGAATAAAATGTGAACGTTGCAATAAGAATGTTTCTGCTTCATTCTTCGCTCAACATAATGTCCGATGTCCGTCCCTaaaagaaagtgttttaaaacaCGTCTGTGAAATATGTGGCAAAGCCTTTCAACGGGAATCCCTTCTTATTTTCCACCAAAAGGTTCATCTTGAACCCGCACCGTGTCCTCATTGTAACAAGTTAATTAAACCGAGCAGTTTAAAACGTCATATTGAACAATCACACAGTGAAATACTACCCAGGGGGGAGAAACAGAGAAGGAAATTAATATTAAGAATCGAATGTCAGATATGCGGGCATAAAGTTAAACGGAAAGCGGACTTAGAAGCGCATACGAACcgatatcatttaaaaattaaaccgtACGTATGTCATATATGTAGCAAAGACTTTTGTGGtagactcagactaaaagaacaTATGGCGACTCATTCAAATGATAATAACTGTTTCTGTACAGTCTGCGGTAAAAAATTTGCAAACCGTGTGTGTTTAAAAATGCATTTCCGGATGCATACTGGTGAATTACCATATTCTTGTGATTTATGCGGACAGAAATTTAGATCTTCAAGTATGATGAAAACCCATCGGCTGAAGAAACATTTGGATAAGACAGTTGGTTGTCCGTTATGTGATAGTATGTTTTATATGGTGCGTGATATGAGACATCACTTTAGGAAAGTGCATTGGAAGTTTAAGGATAGATCGTTCAATGTTAGAGAAGTTGAAGAGCTTGGGGAAGAGTTTTATCATTTGTTTGATGATCAGAGGTTACCAAAAATGGATGTCTGA
Protein Sequence
MEVPAQNQNSNNWEWMKNKLSVIWSSQKFCGLCLENTIRNLCSVDMELVINKQTFSRCLRDIINYVFNDDVENLMSSLFICDACIEKVIQSYLFIHNTKQLFRIINNCVNDINSKVIDVNYQLNNSLNCENANVMIVVESDIDLYKTVIDTKMTEIVPTAFPIAMKQEPEIVIAKVESLIQTAANQKDKENFLYDKPIIKREDTPNIILKEGHLEIQPLNAPRNLKPRYNTYACANCPEIFTIYRSLKEHEKAKHKTSVFCCNLCNKMYNTRQYLNLHYKTHEKAKCKFCQVILPENELMEHLRANHLNLVFPCKFCDLVYYTYDSLTTHFNISHLVNNKNLKSQCRMCLKKIEDGDKKHKCKFACSECFVMPCVHYKYLMSYREQILNHANKIKCMDCDYVTRRKEHLISHVNREHLDHHPFTCADCDQQFYTKLSLRTHIVQFHQEFNCKYCDSQYKDNDSLVIHKNVCKSIIRVFSCNQCAASFDVQEELTIHEYLRHSETVHACKLCKSRFLTVLELEEHHARVHGGIQWKKRRKHIECSLCDIFFNNIKELVQHEKIHTQNEWYPCKKCPKKFKTLIKLYTHGQRHYTDRIKCERCNKNVSASFFAQHNVRCPSLKESVLKHVCEICGKAFQRESLLIFHQKVHLEPAPCPHCNKLIKPSSLKRHIEQSHSEILPRGEKQRRKLILRIECQICGHKVKRKADLEAHTNRYHLKIKPYVCHICSKDFCGRLRLKEHMATHSNDNNCFCTVCGKKFANRVCLKMHFRMHTGELPYSCDLCGQKFRSSSMMKTHRLKKHLDKTVGCPLCDSMFYMVRDMRHHFRKVHWKFKDRSFNVREVEELGEEFYHLFDDQRLPKMDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-