Nmun036819.1
Basic Information
- Insect
- Nudaria mundana
- Gene Symbol
- -
- Assembly
- GCA_963556515.1
- Location
- OY748312.1:2522564-2572201[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.69 89 5.1 0.1 1 23 501 523 501 523 0.95 2 12 0.0078 1 11.2 0.4 1 23 537 559 537 559 0.97 3 12 4.1e-05 0.0053 18.4 3.9 1 23 565 587 565 587 0.98 4 12 0.0012 0.15 13.8 3.9 1 23 594 616 594 616 0.99 5 12 2.6e-06 0.00034 22.2 0.4 1 23 622 644 622 644 0.93 6 12 4.3e-06 0.00055 21.5 4.0 1 23 650 672 650 672 0.99 7 12 1.2e-05 0.0015 20.1 1.8 1 23 678 701 678 701 0.96 8 12 0.12 16 7.5 1.5 1 14 707 720 707 721 0.92 9 12 0.001 0.13 14.0 5.2 1 23 773 796 773 796 0.94 10 12 4.1e-06 0.00053 21.6 0.6 2 23 803 824 802 824 0.97 11 12 9.5e-05 0.012 17.3 0.6 1 23 830 852 830 852 0.96 12 12 0.035 4.5 9.2 0.0 1 21 858 878 858 882 0.92
Sequence Information
- Coding Sequence
- ATGGCTGTTCAGTGCTTGATATGTAACACTAGAGGCATCACAATAAGGAattcttttaacatttttgaggAACAAACAAATTCTTTGGTTAATAAAGAAGATGGGTCTACAACGCAGACTACATTACAATCTAATCGCAAGTTACACGAAGTTGTGAGTGATATAATCGGTATTTCACTGCAGCCAACAAAAGTGCATTGCAACAAAATATGTAAGAAGTGCTTTAAGACATGCTTGGACTACGATAAGATACAAACTAGATTGTCCAATCTTAAAACAGAAATTAGAGACCAATTCAAACATTCTATAAAAACTCTTAACATAGATTACAATAATTATCCAAATGCTATGGTGGAACAACCCAGTGTTGCCACACCAACACCACTGAGGCCTATCGGCAAGAAGCTAGTGTTGCCAGCGTCGAAATTACAACCAATAACACCGGAATTGTTGTTGAAAGTGGGCAAATTTCAGGGTTTAACTAAGGGTAATATAATTTTACCACAGATTAAGAGTCAAAATGCTTCAACActtaacctaaaagtgacagtTGGAACCTCAGTACTGACACACACAATAAAAACAACAACTAccaacccgggaatcaaaccgacTACCAATGTGAATCTCATAGAGTCGCTAAAACAAGAAATAGATGATATCACTACATCACCGAGTCAAACATTCAGTGTTAATTCTTTACCCAGCAATTTTATGTCTGAAGTGATAACTAAAAGTGATAGGAATGATGGTCAGAGTGATGGTAATGATGGTCAGAGTGATGGGAATGATGATGAACAGTCTATGGAGATTGATGAAGATTGTTCACTATCTATAGTACCGGTATCTTCAGCTAACAGCAATAACTTAGTGTTGGAAGTTGGCGCAATTAACTCCAAACCCAAGACCCCCCAGATCCAAGTATCAGAGTGGGAAGTGGATCAACTGCAGACTTTAGCCGGAGATGACCAGTTCATCCTGGGGAAGGTGCAGATACTGAACCAGGGCGAGGAGATTGATGATGATGAAGAGTCCCATACAATAGTTCTGGAGGGTGAGAACGGTTCAATACTGCGAATGGTCTCCGGACAGAAGTTCATGTATGAGGGTCGTGAGATCTCCCTGGTGATGACTGATGACGACCAGCCTCAGGACGAGAATGAGCAGAATGATGAACAGGATGATGATTCTAACGATGAAACAGCAATAGAATTACAAATGGCGGGAGACGAAGAAACCGCAAAAGCAATATTAGCTGCGGCACAGGAACAAGGAGGTGCATTCATAAAAGTGGAGTCAGGAGAAATGTTCCGCGTACACACGGTGGACCAGCGGTTAACTAACGTGGTGGTCAAGAAGGGGGATTCCTTCCAATGTTTACTTTGTGATGTCAAAAATGATACTTATACACCTGAAGAAGGTGAAGGTGACAAGCCCAGCGTGACAGGAGACGCGGAGTCCATGATGCGACACTTGAAGAGGTTCCACGACGCTCGAGTCTACATCTGTCAGTTCTGTTCCGCTATCATGAGGAGGAAGGTCGACTATACTGCACATATTGCGGAACACGCAAGTTCACTGAAAGGCGCCCGCAACGGTGCAGGCAACCACCAGTGCTCGTCCTGCGGCAAGCTGTTCGGCTCCCGCGTGCTGCTGCTGGAGCACGCCAACGTGCACGCCGGCCTGCGGCCCTACGCCTGCAGCAGCTGCCACAAGACCTTCGCCTCCAAGTATACCTTCCAGGCGCATCTCAAGACTCACGCGAACCGTCCACGTCCCTTCAAATGTACCCTTTGTGAGAAGACGTTCCTGACACAACAACATCTCATACAACACGAGAAAACTCACACCGGGGTCAAAGACTTTGTTTGTAATATATGCAACAAGGCGTTCAGCACACAACACAACCTGGAGGTCCACGGCGTGGTCCACTCGGGACACAAGCCCTTCCGCTGTACGCACTGTCACAAGGCCTTCGCGCGACGAGCCGAGCTGCGGGACCATGCGCGCACGCACACTGGCGAGCGTCCCTACCCGTGCGACATCTGCGGCTCGCGCTTCACGCAGCGCTCCAACCTGCACTCGCACCGCCGCGCCACGCACCTGGACGACAAGCGGCACCACTGTACACAGTGTCCCAAGAGGTTCAAGCGGAGGAGCGTGATCGGTCCAACCTGCACTCGCACCGCCGCGCCACGCACCTGGACGACAAGCCTGGCACCACTGTACACAGTGTCCCAAGAGGTTCAAGCGGAGGAGCGTGATCGGTCCAACCTGCACTCGCACCGCCGCGCCACGCACCTGGACGACAAGCGGCACCACTGTACACAGTGTCCCAAGAGGTTCAAGCGGAGGAGATTGTTAGAATATCATATAAAAGCGTCACATACAGGCGAGCGGCCACTCAAGTGTGACATTTGTGGAGCCTCCTTCGTCTACCCCGAACATTACAAGAAGCACCTGCGGATACATAGTGGTGACCGACCTTTTGCTTGCGAGATTTGCGGCAAGAAGTTCAACTCGGCGGACAACAGGAACACTCACCGCTTCGTGCACAGTGACAAGAAGCCGTACGAGTGTGTGTCATGCGGCGCTGGGTACATGCGAAAGCAACAGCTGCTCGCGCATATGGCCGCTAGTgGTCATTTGGCGGAGTCCATAGTAGTGAATCAACCTCGAGTCATTAAAGTTGCGGATAATGGTGATATAGGTGAATCTATACATGCTGGTCAACCTCGAGTTCTCAAAGTTACTGAAAATGGTCCCGTGGAGATATCCCAAGTTCCACCACAGTCCAGTAATAAGTTCGACGCTATATTTGAAGGGGCCGAACTAGATAATACTGTTGAATCAGTTAATATAGTGAGACCAGATGGTTTAGAAGAAGCGAAATACATAAtatctaatgaaaataatttaatactgCAAGTTGCGGATAAGCAAACATTAAGTTTGTTACAAGACAGCGGAGATCCAACACTGTTAACTATACATAATGTAAGTGAACGAACTCAAGCCACCATATTGGAGACAGTGAGCAGTGAAGAGTTGTCCGACCAGACTGAgATAATAGCGAACGACGAGAACGGCGGAGTTGTTAGACTTATACAGATCAAACTGCCGGACGGGAATAATGGATGGGTCGCGCTTAACCGCTGA
- Protein Sequence
- MAVQCLICNTRGITIRNSFNIFEEQTNSLVNKEDGSTTQTTLQSNRKLHEVVSDIIGISLQPTKVHCNKICKKCFKTCLDYDKIQTRLSNLKTEIRDQFKHSIKTLNIDYNNYPNAMVEQPSVATPTPLRPIGKKLVLPASKLQPITPELLLKVGKFQGLTKGNIILPQIKSQNASTLNLKVTVGTSVLTHTIKTTTTNPGIKPTTNVNLIESLKQEIDDITTSPSQTFSVNSLPSNFMSEVITKSDRNDGQSDGNDGQSDGNDDEQSMEIDEDCSLSIVPVSSANSNNLVLEVGAINSKPKTPQIQVSEWEVDQLQTLAGDDQFILGKVQILNQGEEIDDDEESHTIVLEGENGSILRMVSGQKFMYEGREISLVMTDDDQPQDENEQNDEQDDDSNDETAIELQMAGDEETAKAILAAAQEQGGAFIKVESGEMFRVHTVDQRLTNVVVKKGDSFQCLLCDVKNDTYTPEEGEGDKPSVTGDAESMMRHLKRFHDARVYICQFCSAIMRRKVDYTAHIAEHASSLKGARNGAGNHQCSSCGKLFGSRVLLLEHANVHAGLRPYACSSCHKTFASKYTFQAHLKTHANRPRPFKCTLCEKTFLTQQHLIQHEKTHTGVKDFVCNICNKAFSTQHNLEVHGVVHSGHKPFRCTHCHKAFARRAELRDHARTHTGERPYPCDICGSRFTQRSNLHSHRRATHLDDKRHHCTQCPKRFKRRSVIGPTCTRTAAPRTWTTSLAPLYTVSQEVQAEERDRSNLHSHRRATHLDDKRHHCTQCPKRFKRRRLLEYHIKASHTGERPLKCDICGASFVYPEHYKKHLRIHSGDRPFACEICGKKFNSADNRNTHRFVHSDKKPYECVSCGAGYMRKQQLLAHMAASGHLAESIVVNQPRVIKVADNGDIGESIHAGQPRVLKVTENGPVEISQVPPQSSNKFDAIFEGAELDNTVESVNIVRPDGLEEAKYIISNENNLILQVADKQTLSLLQDSGDPTLLTIHNVSERTQATILETVSSEELSDQTEIIANDENGGVVRLIQIKLPDGNNGWVALNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -