Nmun037875.1
Basic Information
- Insect
- Nudaria mundana
- Gene Symbol
- -
- Assembly
- GCA_963556515.1
- Location
- OY748313.1:6489343-6499239[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00013 0.016 16.9 1.6 1 23 113 135 113 135 0.99 2 10 0.023 3 9.8 0.8 2 23 143 164 142 164 0.97 3 10 0.00031 0.039 15.7 1.0 1 23 198 221 198 221 0.93 4 10 0.0022 0.29 13.0 0.1 2 23 228 250 227 250 0.95 5 10 8e-05 0.01 17.5 0.6 2 23 264 285 263 285 0.94 6 10 1.2e-05 0.0016 20.1 0.4 1 22 291 312 291 316 0.93 7 10 0.00024 0.031 16.0 2.5 2 23 325 347 324 347 0.96 8 10 2.7e-05 0.0034 19.0 0.8 1 23 353 376 353 376 0.97 9 10 1.1e-05 0.0014 20.2 0.9 1 23 385 407 385 407 0.99 10 10 0.052 6.8 8.6 0.2 1 19 413 431 413 436 0.87
Sequence Information
- Coding Sequence
- ATGAATGAAAGTAATTCAGTGAAATGTATTGGGTTAGAGGATGTAGCCTATCAGAACTACTGTTTTGGATGTCTATGCCATATAAaggaaaaacaaataaaaagttattcatTTCATACCGACCCTCTCAAGGAATTATTTCAGATGGAGAGTATATTCCTGTGTTATCTGTGCAGAAGAATAGCACAGCACACAGAGTTGTTTATACAAAATGTgcaaagtaataaaataataatggaaAGAATTCCTGAAATACAAATGACAAACATATCAACGAAGCAATGTATGGAGGAACGTAACAGAGTGTCTAAAGACCCTAAGTACTTGGAATGTGTTTACAAATGTACTGACTGTGTCAAAGGGTTCACTTTCAAAGGGAGCTATGATACACATATGGAGAAACATGATCAGAGTATAGGCGATATTGAGTGCAAGATATGCAAACAGAGAATGGAATCAAAAGAAAAACTTGACCGCCATGTTAGATATCATTTTATcCGATACAAATGTCCAGAATGCAGCATAAAACGTAATTGTCGAAGGAATATTGAAGAGCATTACATTGCGTGTCACTTAGGTACCACTCAACAGTATGCTTGTCAACAATGTATGAAGGCTTTCAAACGACTGTCGTCGCTCCGCAAGCACGTGGCGTACACGCACACTCGCCGCGAGCGCGTGACGTGCGCGTACTGCGCGCGCTCGTACGTCGACAAGGCTGTACTCAAGTCGCATATGATGCTtaaaCACGCTAAGGAAGTTTCGGCTGTTGAAGCAAGCAACAGATGTATTTGCCCAGCGTGTGGTATGGGGTTCAAAACTCCTTCACAACTACGGAACCACAgtatcaaacattcagacacacGGGAACATTATTGTGTTGAGTGTGACAAAAGTTTCAAATCTGAAGCTGCATTGAAAACACATTTGAAAACTGCCGCTATTCATATCAATTATAACGAAAAGCCGTTGAGTTGTTTGCATTGTGAGAAAAGGTTCTCGAACCGCCGCGATGTTGATCGTCATATGAATAGAATACATCTCAACGTCAGACCATTTACTTGTGACCAATGTGATAAGGCTTATGTGAACTCGTGGTCACTAAACGAACACAAGAGGTATACTCACGACGGGTACAAAAGACCCCTGCAGTACCAGTGTCCTATGTGTGACAAAGCTTTTGCTCTCAATCACATTCTCAAAACCCACATCCGTACCCACACTGGGGAACGTCCGTACCAGTGCAGCAAATGTCCGGCCCAGTTCAGTCAGGCCAACATTCTCAGAACACACGATAGACTTATACACTTAAAATTAACTAGAAACGGTAGACATAAAATGGGTGCCgtgaaataa
- Protein Sequence
- MNESNSVKCIGLEDVAYQNYCFGCLCHIKEKQIKSYSFHTDPLKELFQMESIFLCYLCRRIAQHTELFIQNVQSNKIIMERIPEIQMTNISTKQCMEERNRVSKDPKYLECVYKCTDCVKGFTFKGSYDTHMEKHDQSIGDIECKICKQRMESKEKLDRHVRYHFIRYKCPECSIKRNCRRNIEEHYIACHLGTTQQYACQQCMKAFKRLSSLRKHVAYTHTRRERVTCAYCARSYVDKAVLKSHMMLKHAKEVSAVEASNRCICPACGMGFKTPSQLRNHSIKHSDTREHYCVECDKSFKSEAALKTHLKTAAIHINYNEKPLSCLHCEKRFSNRRDVDRHMNRIHLNVRPFTCDQCDKAYVNSWSLNEHKRYTHDGYKRPLQYQCPMCDKAFALNHILKTHIRTHTGERPYQCSKCPAQFSQANILRTHDRLIHLKLTRNGRHKMGAVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -