Nmun028718.1
Basic Information
- Insect
- Nudaria mundana
- Gene Symbol
- -
- Assembly
- GCA_963556515.1
- Location
- OY748305.1:12137234-12154716[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.058 7.5 8.5 0.8 6 20 12 26 7 28 0.88 2 13 0.47 60 5.6 0.3 3 20 35 52 33 54 0.92 3 13 0.17 22 7.0 0.3 1 12 210 221 210 230 0.90 4 13 6.8e-05 0.0088 17.7 0.5 1 23 371 393 371 393 0.97 5 13 1.2e-05 0.0015 20.1 1.4 1 23 407 429 407 429 0.99 6 13 0.87 1.1e+02 4.8 0.1 1 9 454 462 454 475 0.84 7 13 0.00043 0.056 15.2 0.8 3 23 483 503 481 503 0.96 8 13 0.0053 0.69 11.8 2.9 1 23 519 541 519 541 0.98 9 13 3.1e-06 0.0004 21.9 4.2 1 23 547 569 547 569 0.98 10 13 0.023 3 9.8 6.5 3 23 577 597 575 597 0.97 11 13 1.2e-05 0.0015 20.1 0.8 1 23 603 625 603 625 0.98 12 13 0.00043 0.055 15.2 1.1 1 23 629 651 629 651 0.98 13 13 0.0005 0.065 15.0 0.1 1 23 659 682 659 682 0.96
Sequence Information
- Coding Sequence
- ATGGGAGGCCAACAGATAAATTGTCCTCTTTGCTGTGATAAGTCTTTTGACTCCAAACATGCACTGGTTGAACACATAACTAATGTTAACAACAATATATTTTGTCCTATTTGCAACAGTAAATGTAACTCATTGCAAGGTCTTACTGAGCACCTAACTGTATATAACTGCCAACCACCACAAAGTGCACCTGCTCGAAATTATGTTATATATGACGAAGAAATGAATGTAAATACCATAGCAAATACTGAAAATTCTACTGAAGCACAAGACCTAGATTTAAAGTCACTTTCAACTGAAGTAAATACACCAGAAGCTCAGTACCTCACAGATGAAACATATGAAAGTCAAGATGAAACTGGTGACGAGATGAGATATGTTGAGGTCCTCAGGAAATCCAGATCTAAGACGGGACTTCAAACTTCTGACATAAAATTTTTAGAGGAAGATGGACATAATCGTTATGTGATTGTTACACCAAATGAAGCATTAAATGGTAGCAATTCAATATTAACAAAACAAAATGTAGACGGCACTATATCACTGACTAGTGTAAAAGATTTGAAAGTTGAGATAGATCCACTGTTAGAATCAGAGCCGGTCTCTGAGCCCAAACAAGTTGAGCTCTACAGCTGTAACACTTGTGGTGTATCATTTACATCTGTTATTGAACACATACAGAACTACCATAATGATCAAGAAGTTGTCCTTGAGGATGGCGATGGAGAGGCCACAATAGGCGAAAAGCAAACTGAGAGACGTGTGATAACAGATACTGGCAACATCGTTGTGGAACCATTGAATTATAAACCTGATGTAAGCGAGCATTGCTATGATGTTTCAGAGTCAGAAGAAGAGCCGAAGAAATCGAATGTAGTATTGGACAAGCATGGCCATGCAAACACTAAACGATCCTCTCGACGTAAGAAAACATCTGAGACTGTCACTAATGCAACTACAGATAAGGCCAAAGGTGATTTTCACAAAGTAATAAAGAAGCAGGTGGAGATGAAAACGGGTCTCACATTCAAAATGTATAATTGTCTCTCTTGTAATATTACTGTCACAAATTTAAATGAATTCgaaggtcatccatgtaaagcgTTTAAACATCCCTGTACCCGTTGTCCAGTGGGATTCGACACCTCAAGATCTTTACAGGCACACATGAAAGTTCACAAAGAGAAACCAGATGGCAGTCCCGACGTACCATTCTCATATGTGTGTGAAGTGTGCTCTACTGTGTTTAAATCGAACAAGTCTTTGAAGCTACACAAACGAATGCATGATCCAATCAAagCACGTCCTATAGAGTTGCCAGTTGCGAATGGATGCGGTAAAATATCGAAAGGTGAACTTTACGTGTGTCCAATATGTGATAAAGAGATCCCTCTGGAGTATCGCACGGTACATGAGAACTCACACAAGAGTAGTAATAAAATGAACTGTAGTATATGTAACAAGAAGTTCACGTCACTTGAGTTTATGGAGATGCATATGAGTATACATAATATGGATAAAGTCCCAGCAAGCAAGGAAGATAAATCACTTCCATACAAATGTTTGTTCTGCAGTAGAAGATTTGCGAGACCTCACGAGAAAGTTAAACATGAACGTATCCATACCGGCGAGAAGCCCCACTCGTGCGAGATTTGCGGCAAGTCGTTCCGCGTGCTGTACTGCCTCACCCTGCACATGCGCACGCACACCGGCGCCCGGCCCTACGGGTGCACGCACTGCGGGAAGAGGTTCAAGGCCCACAGCGTATACAGCCACCATCTGCAGACTCATTCGGATGTGCGTGCGTACAAGTGTCCGTTCTGTCCGAAAGCGTTCAAGACGTCCGTGCAACTCTCCGGACATAAGAATTCTCACACCAAACCGTTTTCCTGTCAACATTGTAATAGGCCGTTCGCATCCCTATACGCGGTTCGAGTTCACACAGAAACCCACAACCGTCAGAACAACCTAAAGTTCTCATGTCAGATGTGTGGAGCGAGTTACGCGAGAGCCTTCGCACTGAAAGATCACGTGAAGCAGGTGCATCAGAAAGATATAGACACCATGGAAAATATTGTCGAGAATACCAATAGCCAGGATGGATCTGATGATTGGGTGATGACGGAGACCGTAACTGACTCTGATGAGCTTCCATCGCTCAACAACGAATTACAACAATCCATAACAGATTTGGAAATGACTACCAACGGTTTGTTATAG
- Protein Sequence
- MGGQQINCPLCCDKSFDSKHALVEHITNVNNNIFCPICNSKCNSLQGLTEHLTVYNCQPPQSAPARNYVIYDEEMNVNTIANTENSTEAQDLDLKSLSTEVNTPEAQYLTDETYESQDETGDEMRYVEVLRKSRSKTGLQTSDIKFLEEDGHNRYVIVTPNEALNGSNSILTKQNVDGTISLTSVKDLKVEIDPLLESEPVSEPKQVELYSCNTCGVSFTSVIEHIQNYHNDQEVVLEDGDGEATIGEKQTERRVITDTGNIVVEPLNYKPDVSEHCYDVSESEEEPKKSNVVLDKHGHANTKRSSRRKKTSETVTNATTDKAKGDFHKVIKKQVEMKTGLTFKMYNCLSCNITVTNLNEFEGHPCKAFKHPCTRCPVGFDTSRSLQAHMKVHKEKPDGSPDVPFSYVCEVCSTVFKSNKSLKLHKRMHDPIKARPIELPVANGCGKISKGELYVCPICDKEIPLEYRTVHENSHKSSNKMNCSICNKKFTSLEFMEMHMSIHNMDKVPASKEDKSLPYKCLFCSRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVLYCLTLHMRTHTGARPYGCTHCGKRFKAHSVYSHHLQTHSDVRAYKCPFCPKAFKTSVQLSGHKNSHTKPFSCQHCNRPFASLYAVRVHTETHNRQNNLKFSCQMCGASYARAFALKDHVKQVHQKDIDTMENIVENTNSQDGSDDWVMTETVTDSDELPSLNNELQQSITDLEMTTNGLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -