Nmun033700.1
Basic Information
- Insect
- Nudaria mundana
- Gene Symbol
- -
- Assembly
- GCA_963556515.1
- Location
- OY748309.1:7189034-7192440[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.15 19 7.2 0.1 2 23 129 151 128 151 0.96 2 20 8.2 1.1e+03 1.7 4.4 1 20 173 192 173 194 0.92 3 20 5.3 6.8e+02 2.3 0.2 10 23 198 212 195 212 0.89 4 20 0.0021 0.27 13.1 1.6 2 23 219 240 218 240 0.97 5 20 0.045 5.8 8.8 1.7 1 23 246 268 246 268 0.96 6 20 0.002 0.25 13.1 3.3 1 23 313 335 313 335 0.96 7 20 2.6 3.4e+02 3.3 0.5 3 11 364 372 362 385 0.72 8 20 0.0041 0.52 12.1 2.3 1 23 405 428 405 428 0.97 9 20 3.2e-05 0.0042 18.7 0.5 1 23 433 456 433 456 0.97 10 20 0.0048 0.62 11.9 4.3 1 23 461 484 461 484 0.96 11 20 0.0016 0.2 13.4 0.5 2 23 487 509 486 509 0.95 12 20 0.63 81 5.2 1.2 3 20 518 535 516 537 0.91 13 20 0.00082 0.11 14.3 3.1 1 23 589 612 589 612 0.97 14 20 2 2.5e+02 3.7 0.0 2 23 685 708 684 708 0.88 15 20 1.3e-05 0.0017 20.0 0.1 3 23 715 736 714 736 0.94 16 20 0.014 1.8 10.5 4.8 2 23 741 763 740 763 0.94 17 20 0.00023 0.03 16.0 4.0 1 23 768 791 768 791 0.97 18 20 2.9e-05 0.0037 18.9 4.8 1 23 795 818 795 818 0.97 19 20 0.0002 0.025 16.3 0.3 2 23 825 846 824 846 0.96 20 20 2e-05 0.0026 19.4 1.2 1 23 852 874 852 874 0.97
Sequence Information
- Coding Sequence
- ATGAACCTGATAGCGGTTAGGGTTCAAAAGATGATACCTACTAAACAAGCTGTTTTAAAACACGCGTCAAACTGTACTGCCAGAAAAGAACATGTTTCATGTGAACATGTTGAAACTGTCTCTGCTGACGACGAAGATGAGAAAATATCAATGAAAGATCTCAGAAACAGTATCGCATCCATAATTAATATGTCAACTGCGATGCCTTTTAAATTCTTCTTGGGCAAATTTAGATATTTTTACTGTCCTATAGATTTTGCTACTTGTGCTATATTAAAAGAGCATACAGTATGTCAACATCCTCAATGGGATGTTAGTGAAAAGTGTATGGAACTTCGTAATAGGTTTAATggaagtaaaattaaaattgatACAGCATCGTCGTCTTGCAAATTGTGTTACGAATCAATAGTGGATTTGGATACTCTAATAGACCATTTAATAACAAAACACGACGTAACATGTAACAAGTTTGCTGCAAATTACCTACAGTCTTTTAAATTGATTAGTGGAAGTTATCCTTGCCATCTGTGCGACCAGGTTCATAGATATTTCAGTTTGCTTCTCAAACATAgttgtaaaacaatgGGTTTCGTCAAATATTCCTTCTTGGTGAACCATATTAGACGTTCGCATTTAAAAGAGAAGAATGTGAAATGCAAGATGTGCTCCGAAAGCTTTTTCGATCAGCAAAGATTGAAGATGCACATGGTAAAACATGTCGGGGAAAGAAATTTCCACTGTGATATTTGTTCCAAAAAGTTCCTTTGGAAGCGTAATCTTAAAGCCCACATTGCATCACATGTTAGCAAGGCACATTTCTTTTCAGATGAAATGTCAGGAGCGTACGGAACGTGTACCTCTGAAAGGCGAcggaaaaatctcaaaattgttTTTGACCACACATCTGTTATACCTTTCAAATGGCGAGGCAAATATCTCTGCTTCTATTGTGGCAAGAACTACACGGAATATACAGAATTTAAAAAGCATACGAAATCTCACGGCCCATGTAACACTCAAGATTACGCGCTAAAGCTGATCAAAGGCAACAATATAGAAATTAAAATCGATGTTTCAGagataaattgtgaaatatgtAACGAAACGTTTAACTGTTTTGAAGAAATTATCGATCATTTAATTCTGAAACACCAGTTGGACTATAACAAAAGTATCGCGACACCTTTCCAAGAATATCGATTAGTCGATTTTAAATGTCTTCATTGCGAAGAGAAGTTTTCGTATTTTGGTTATTTAGTAACACATGTCAACAGCTTGCATccacaaaactgttttatttGTAATGACTGTGAAGttcgttttaataaaaaaagggaTTTGGCTATTCACATAAGGACTTATCACCGCGTTGGGGGTTATCATTGTGATCTATGTTTGCAAAGTTTCGATACCTATAAAACTCTAAAGAGACATCAGAACAATACACATTTCATGCAATGCAAAAGTTGTAGTGCTAAGTTTGCGTCTCTATCTTTGCTACAAAAGCATTTAAAAGCGGAACATCCTCACGACGACAGTAACACAAATTGCCGATATTGTTCAAAAGAATTTCATTCAATTATAGGACTAAAGCAACATACTAGTAAATGCAAAGTGAAACTAATTTCTCAAGTTGAAACAGAGTCATTTAAAGAAGACAACCTAGAGCCTCGTAAGAAACAGAACATCATACAAATCcgtcaaaatatacagtgtgTTTTAAATATGTCTACTGCAGTTCCTTTTAAATTCTTTTCCAAGTTTTCTTGCTTCTAttgttcgaaaaagttttataaTTTCGATGACTTACGACTGCATACAAATAGTGAACATCCACAATGCGACTCGAAACAGAAATGCATGAAAAAATGCAGAGGTGAACGTATTAGTGTAAAGATCGATATTTCTGCTTTGGCTTGTAAAGTTTGCTGCCTACCAATGCTAGATTTAGAGACACTAATTACTCATTTAGTAGATAAACATAAGGCTAACTATGATAAGTCTATCAGTGGGTGTCTGGAACCTTTTAGGATTATTAAAGACAATATTCCTTGTCCTATATGTCCAGATAAGGTGTTTCGCTACTTTGGGATCTTGTTACGTCACGTCAATGCTGAGCATAGTAATAATAACAGAATCTGCGACTTCTGTGGTCGAAGTTTTCGGAATGCGGCCAACCTAAATGTCCACATAACGTACGCTCATACAGGCTCATGTGAATGTGATATCTGCGGTATTCAATACAAAAACCAATGGTGTTTAGCAAGACATAGAGCTAAGTGTCATAACGCGAAAGATTACAAATGTCAAAAATGTCCTGAGACTTTTAACTCACAGTACCATAAGCAGAAACATTTGATTAAAGTCCATAATATTGGTCATAAATGCGATTATTGTGACAAAATGTTCACAAGAAATTCTTTTATGAAAGACCACGTGAGACGGACtcatttgaaagagaagaatgTGCCATGTTCCATATGTAATGAGAAATTCTTCGATAACTACCTTTTGAGGATGCATATGGTAAAGCATGAGGGTGATAGGAAATTTCATTGCACTGTTTGTGGAAAAGCATTCTTGAGGAGGAGTAATTTAGCTTCACATATGGATATGCATAAAAAGTATGGACATGTTCAGCAAATTTGA
- Protein Sequence
- MNLIAVRVQKMIPTKQAVLKHASNCTARKEHVSCEHVETVSADDEDEKISMKDLRNSIASIINMSTAMPFKFFLGKFRYFYCPIDFATCAILKEHTVCQHPQWDVSEKCMELRNRFNGSKIKIDTASSSCKLCYESIVDLDTLIDHLITKHDVTCNKFAANYLQSFKLISGSYPCHLCDQVHRYFSLLLKHSCKTMGFVKYSFLVNHIRRSHLKEKNVKCKMCSESFFDQQRLKMHMVKHVGERNFHCDICSKKFLWKRNLKAHIASHVSKAHFFSDEMSGAYGTCTSERRRKNLKIVFDHTSVIPFKWRGKYLCFYCGKNYTEYTEFKKHTKSHGPCNTQDYALKLIKGNNIEIKIDVSEINCEICNETFNCFEEIIDHLILKHQLDYNKSIATPFQEYRLVDFKCLHCEEKFSYFGYLVTHVNSLHPQNCFICNDCEVRFNKKRDLAIHIRTYHRVGGYHCDLCLQSFDTYKTLKRHQNNTHFMQCKSCSAKFASLSLLQKHLKAEHPHDDSNTNCRYCSKEFHSIIGLKQHTSKCKVKLISQVETESFKEDNLEPRKKQNIIQIRQNIQCVLNMSTAVPFKFFSKFSCFYCSKKFYNFDDLRLHTNSEHPQCDSKQKCMKKCRGERISVKIDISALACKVCCLPMLDLETLITHLVDKHKANYDKSISGCLEPFRIIKDNIPCPICPDKVFRYFGILLRHVNAEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGIQYKNQWCLARHRAKCHNAKDYKCQKCPETFNSQYHKQKHLIKVHNIGHKCDYCDKMFTRNSFMKDHVRRTHLKEKNVPCSICNEKFFDNYLLRMHMVKHEGDRKFHCTVCGKAFLRRSNLASHMDMHKKYGHVQQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -