Nmun010471.1
Basic Information
- Insect
- Nudaria mundana
- Gene Symbol
- -
- Assembly
- GCA_963556515.1
- Location
- OY748291.1:21578163-21589463[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3 3.9e+02 3.1 1.5 2 23 266 287 265 287 0.79 2 13 0.0037 0.48 12.3 0.9 1 22 292 313 292 316 0.92 3 13 0.0005 0.064 15.0 2.6 2 23 430 452 429 452 0.93 4 13 0.00044 0.057 15.2 0.1 1 23 458 480 458 480 0.98 5 13 0.029 3.8 9.4 0.2 1 23 491 514 491 514 0.88 6 13 2.3e-07 3e-05 25.5 3.5 1 23 519 541 519 541 0.98 7 13 7.1e-06 0.00092 20.8 0.8 1 23 547 569 547 569 0.98 8 13 0.00034 0.044 15.5 4.2 1 23 575 597 575 597 0.97 9 13 6.7e-06 0.00087 20.9 0.3 3 23 605 625 603 625 0.97 10 13 0.0034 0.44 12.4 2.1 1 23 631 653 631 653 0.98 11 13 0.0001 0.013 17.2 0.1 1 22 662 683 662 683 0.95 12 13 2.6e-05 0.0033 19.0 1.4 1 23 690 712 690 712 0.98 13 13 6.4e-05 0.0083 17.8 3.4 1 23 718 741 718 741 0.96
Sequence Information
- Coding Sequence
- ATGGAAGTATACCTTTACAATTCTACTGTTTGTAGATTGTGTGGTGAAGAAAATGATAATGGGACCTTATTATATACCGCTGAGGATAATAATTCAAACTTAAGTGAAGTTATTAATACTTATTTACCAATTAAGGTATTTGATGATGGACAACTACCACGGACCATATGTCCAGGATGCACTATTCAACTGGAAGCCACCGTAGAGtttttaacattaataataaatggCCAGAAAGTCATTCGTGAACTTCATAACAGAGAGAAAGAATATAAGAAAACAGTTTTCCATTCTACTTCTGAACAAGATGTCATTacggaaaatattatttatgaagTAAACACTAGCACTGGAGTTTACCAAGTAGAGCACCCAATAGCTTTACAAGTTGCTGGACTTAGTAAACCTAAACGTAAGCGAGGCAGGCCTCCTAAGAAACACAAAACTCCTGAAGAGCTAGCCCAGGAAGCAGCTGCTAAAGTTAAAGAACCGAAAACCAATAAAACTAGTTGCAGAGATGAGGAGCCCTCTGGTAAAAGAAGGCGCATGGCTCCAAAGCGCTACAAAGAAGCTGTACAGGGTAAAGAACTGGACAGGATATTTAAAGAGGAAGGTGTCATTGATGGTGAGGAAAGTGATCGAGAAATGAAGCCTAAAATAGAGGTGGAAGTAAAAATGCCTGTACCAAAGGAACCAGAGGTTATAGGTCATATGGAAAACTCAGGTGAACTGGTTGTGTTTGTGAAAGGCAAAGGTCGAGGCAGACCTAAAGGTCCAATGAGATTAACTCGCAAGGAGTGTTCAATATGTGGTATGGAGTTCTCATGTGCCGGTCGGTACATGTCGCATGTGGCACACCACGGTCCAGTCATATACCAATGTGGCCAGTGTAATGAGAACTTCGATACACAGTTAAAGTTCACCAACCATCAGAAAGAGTTGGGTCACGTCGGGAAGAATATTATACCAACTGGGAATAAGCATGAGCAAAAAAAACAATTAAAGACTATCAAACCAGAGCCACTAGAACAAGATAACAATCAGTCAACGACTGAAGTATCAGATGTGACAAGTGTGATGACGGCTCTACCGGATTTGAACCCACAACCTATAATTGAAGTCGATGTTAAAAATGAACTGTTTAACAAACTTACAGAGACCGACACAGCGAGTGTTGATGATACTGTTGAAATTGATGTCAGTAACGACACTGAAGCTGTACAAGATGGTGAGAAGTCGGATAAAGTGGAACAAGTGGAGACCACACCGTCAGGGAAACCAAGACTTAACTGTCCACACTGTGATAAAACATTTAGCACTAAGCAGAGCAAGTCTATGCATATTAAGGCCACGCACGGCGGCGAGCGTCCTTACTCGTGCGGCGAGTGCGGCGCCAAGTTCGCCTACCCGCGCTCGCTGGCGCTGCACCGCCTGTCGCACCGCCGGCACACGCGCGCCAACAAGGAGGGCTTCGCGTGCGACTTGTGCGGGAAGgTATTAAATCACCCGTCGTCGGTCGTGTACCACAAGGAGGCGGAACACGCCGGACAACGATACGTTTGCAATAAATGTGGCAAGTCGTTCAAACATAAACAACTGCTGCAGAGACATCAACTCGTACATTCACAAGTCAGACCCTACACTTGCAAGACGTGCGAAGCGTCATTTAAAACCAAAGCGAACTTGATTAACCATCAGCTGCTACATACTGGCGTTAAGAAGTTTGCATGTGAGCTCTGCAAACATAGGTTTGCACACAAAACTAGTTTAACGTTGCACATGCGGTGGCACACTGGCCAGAAGCCCTACGGATGCGCGACGTGCGGCAAGTCGTTCAGCCAGAAGGGAAACCTGTCGGAGCACGAGCGCATCCACACGGGCGAGAAGCCCTTCCGCTGTGCGCTCTGTCCGCGCGCCTTCACCACGTCCTCGCAGCACCGCCTGCACGCGCGCCGCCATGCCGCGCCGCGCTACTCGTCCACGTTCGCCTGCACGCTCTGCGGCAAGAGGTTCGCCAGTCGCGGCGCGTGGAGTGCCCACATGCGGCGCGAGGCAGTGTCGGACGCGCACCGCTGCGCCACGTGCCCGCGCACGTTCTCCTCGCGCTGGGCGCTGCTGAAGCACGCGCGCACGCACTCCGGTGAGCGTCCCTTCCGCTGTCCGCACTGTCTGCGCGCCTTCGCCGACCTCTCCAACCTCAACAAGCACAAAAAGCACGTCCACAAGCAGATCAGCCTCCTCGCCAACACCCAGGCCCAGGTCGAGGTAGTGGACCCCGAGACCCTGGTGGTCCCTGTGCCCAGCGAGTCCCCGGGTGACGTCAAGATACTGGACGAGTCACAGGACTCCCAGGAGAGAGTCATCTATGTGGCGTACGACGTCGACGAGCAGGACTCGCCTGGCTTCCAGATACTGTCGCCGGAACAGGCGGCAGGATTGGAGGACGCCAAAGTGTTGACAGCGTGCGATCTATACTCTAACCCCTCAACGATGGTTCCGCAACCGGAACTGGAACATTTGGAATTGGAACCGGAACAACTCGAGGAAGATGAATTGGAACAACTGCAGGAACAACTTGTGTTGGAGAATCACGAGCATATACCTGTGACAGATGAACAAGGCAACCCTCTACACTTCACTATGCAAGACGGCACGCGACTCGCTATCACATCTTCTGATGGGAAATCATTGCAGGTGATCACACAAGACGGTCAGACTATTCCTGTTGAGATTAACGGATATGCGGATGAAGAGGAGGTGGACAACCCAGACACTATAGTACATCAGTTGAACCTACAGAAGAGTGTAGAAGATGTCTCCGCTCCTGTCACACATTACTACACTATCGTTTAA
- Protein Sequence
- MEVYLYNSTVCRLCGEENDNGTLLYTAEDNNSNLSEVINTYLPIKVFDDGQLPRTICPGCTIQLEATVEFLTLIINGQKVIRELHNREKEYKKTVFHSTSEQDVITENIIYEVNTSTGVYQVEHPIALQVAGLSKPKRKRGRPPKKHKTPEELAQEAAAKVKEPKTNKTSCRDEEPSGKRRRMAPKRYKEAVQGKELDRIFKEEGVIDGEESDREMKPKIEVEVKMPVPKEPEVIGHMENSGELVVFVKGKGRGRPKGPMRLTRKECSICGMEFSCAGRYMSHVAHHGPVIYQCGQCNENFDTQLKFTNHQKELGHVGKNIIPTGNKHEQKKQLKTIKPEPLEQDNNQSTTEVSDVTSVMTALPDLNPQPIIEVDVKNELFNKLTETDTASVDDTVEIDVSNDTEAVQDGEKSDKVEQVETTPSGKPRLNCPHCDKTFSTKQSKSMHIKATHGGERPYSCGECGAKFAYPRSLALHRLSHRRHTRANKEGFACDLCGKVLNHPSSVVYHKEAEHAGQRYVCNKCGKSFKHKQLLQRHQLVHSQVRPYTCKTCEASFKTKANLINHQLLHTGVKKFACELCKHRFAHKTSLTLHMRWHTGQKPYGCATCGKSFSQKGNLSEHERIHTGEKPFRCALCPRAFTTSSQHRLHARRHAAPRYSSTFACTLCGKRFASRGAWSAHMRREAVSDAHRCATCPRTFSSRWALLKHARTHSGERPFRCPHCLRAFADLSNLNKHKKHVHKQISLLANTQAQVEVVDPETLVVPVPSESPGDVKILDESQDSQERVIYVAYDVDEQDSPGFQILSPEQAAGLEDAKVLTACDLYSNPSTMVPQPELEHLELEPEQLEEDELEQLQEQLVLENHEHIPVTDEQGNPLHFTMQDGTRLAITSSDGKSLQVITQDGQTIPVEINGYADEEEVDNPDTIVHQLNLQKSVEDVSAPVTHYYTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -