Nmun040073.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nudaria mundana
Gene Symbol
-
Assembly
GCA_963556515.1
Location
OY748316.1:840509-855169[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 5 6.5e+02 2.4 3.0 9 23 208 223 207 223 0.94
2 17 0.14 19 7.2 3.8 1 23 227 249 227 249 0.98
3 17 0.0002 0.026 16.2 1.2 1 23 255 278 255 278 0.95
4 17 1.4e-05 0.0019 19.8 0.9 1 23 284 306 284 306 0.98
5 17 0.00032 0.041 15.6 6.1 1 23 324 346 324 346 0.99
6 17 0.11 14 7.6 0.4 1 23 350 372 350 372 0.96
7 17 0.0001 0.014 17.1 0.7 2 23 382 403 381 403 0.96
8 17 9.7e-06 0.0013 20.4 0.4 1 23 409 432 409 432 0.96
9 17 0.57 74 5.4 1.3 2 19 468 485 467 488 0.75
10 17 3.2e-07 4.1e-05 25.1 0.2 1 23 491 514 491 514 0.95
11 17 3.2e-05 0.0041 18.7 0.5 1 23 520 542 520 542 0.98
12 17 3.1 4e+02 3.1 8.3 2 23 553 574 552 575 0.95
13 17 0.00054 0.07 14.9 0.3 1 23 578 600 578 600 0.96
14 17 0.00049 0.063 15.0 0.7 1 23 609 631 609 631 0.97
15 17 0.00017 0.022 16.5 0.6 1 23 637 660 637 660 0.95
16 17 3.9e-06 0.00051 21.6 1.9 2 23 697 718 696 718 0.96
17 17 0.00016 0.02 16.6 0.7 1 23 723 746 723 746 0.95

Sequence Information

Coding Sequence
ATGAGTGAAATATGGAATTTAAGTACACTATGTCGTTGTTGTCATGCAGACGGATGTTTCAAGCGGCTTAATCAAGTGTATCCAAATGAAAGTGCCATGGAAATTTATGAAGTAATGTTACAGGAAAGTTTAGGTCTGAAGcttatCCAACCGGTCACAGCTCAAGCATCATACACAATATGTGATACATGTATAAATCAACTACGAGATGCCTCACAGTTCCGAGCCCAAGTCGTGGAGTGCgaggaaaaatataaagtttattTAATCAATGAACAATTTGTTGATACCAACGTTGCTATAGAAACGGTAAAATCTGAATTAGACACAGactcagatgatgatgattataaaaATGATATAAATGTGGATGAGAACGTTCAAGACATGGTCGAGGTGGAAATTAAAGGTCTGATAGCACCAAAGGTAGAGAATGAAAATGATACAGAAACACAGATagagaaagaagaagaaacagAGACAAAGTGCGAGAAAGAAGGCTCTACAGAAGATCAGAGTGAGAAAAAAGATGTCACAGAAACAAACATTACTCCGATTAAAGAAACCAATAGCAATGCCGTCCAGAAGAAGAGTCATATCGATGTCGCTCGCAACTtgataaGTTTCCATCGATACAGCCATTTAGATAAACATGTCAAAACACAACATGGAAAAGTCTATCCATGTCAATTTTGTGACATAAAATTTAGTTGCCGAATCAGTTGGACCAGACATCAAAAATACCATTCGGCCACAAAAGATTATCTTTGTGATCACTGCGGACGGAAGTTCTTACAGAAGTTTAATCTCGTGGACCATATAAGAGTAGTACATTTAAAGTTAAAGCCGTATACTTGTTCTATATGTGGAAAAGCGTTCCCAACTAAAAGACGAGCTAAAAATCATATGAAATTACATTCAGAAGTGCAAGTACATGAAGGAGAACAGAATAAAGTAGGACAGCAAACTTATAAATGCGACTACTGTTCAAAGAAATTTGCTactaaaaaacgttttaaacaacACAGACAGAGACATGAAAATCAGTTTGAATGTCTTTACTGTCATGTAATATTGCCAAGTAAAGATGaatttattttacataaaaacgcGCATTTTCGGGGCCATCTTGTTGGGCATTTGACATGTCATATATGTGGTCAGATTTTAATGACAAAATACAGTTTGAATAGACACATGGTGATTCATAGTGGTGATAAAAAGTTTGCTTGTGATATCTGTGGTACAAAATTCACACAAAAATCTTTAGTGCTTCGTCATATATTAAGAAATCACAATCGTAATAAACAAATTGAAACGGGCAAGTGTGTTGTGTGTAAAAGATTTTATAAGGACATAGACAAACATATGGAAAGTCACGAAGATTATAAAAGAACATGTTCCTGTGATGTCTGTGGCAAAAGACTCAATTTGAAAAAACACGCGAAACTTCATGCAGCTACCAAAGATTACCTTTGCGATTACTGCGGAAAGAATTTCATACAGAAATCCAATCTTATTGACCATATCAAAGTAGTACATTTAAAACTAAAGCCTTATACTTGTGATATATGTAGAAGAGCGTTCCCAACTAAAAGGAGTGCAGAAAATCATATGAGATTACATCCAAGAAAGGAAGAAGTACAGAATGCTAATAAATGTGAATATTGTCAGAAGAAATTTCTTTGCCCAAAGAGTTTCCGAACACACAGACGAACACATCATAACCAATTTGAATGCCGTTACTGTCCTTTAATATTTACAAGTAAAGAGGCACTTATTTTACATAAACAGGATCATTTGAGTAATCATCGTGGAGGTCTATTTACATGTCAAATATGTGGTCAAATGTTAATGACAAAATTCACTTTGAATAGACACGTGGAGAGTCATAGTGGTATTAAAAAGTTTGCTTGTGACATTTGTGGAACAAAATTCTCACAAAAAGCTCTAGTTCTTCGTCATAAATTAAGAAAACACAATCCTGGTGTACAAACTGGGACACCGGGCAAGTGTGTAATCTGTAAAAGAGGGTACAAGGACATACAAAAACATATGGAAACTCACGACGAAGATAAAAGAAAGTGTGTCTGTGATGTCTGTGGTAAAAGTTATCCAACAAACAGCACTTTAAATCGCCATAAACAAAGTCACTATGGCATTGTCTACGATTGTGATATATGTGGTAAAAAGTATATGAAGAAAGGTAGTTTGAGAAGTCATAAAATAAAGATTCATAATGTTAAAGAGGAGAATAGAGAAGTTGTTAAACAAGAGACTCAAGTTGTATTGCAGTGA
Protein Sequence
MSEIWNLSTLCRCCHADGCFKRLNQVYPNESAMEIYEVMLQESLGLKLIQPVTAQASYTICDTCINQLRDASQFRAQVVECEEKYKVYLINEQFVDTNVAIETVKSELDTDSDDDDYKNDINVDENVQDMVEVEIKGLIAPKVENENDTETQIEKEEETETKCEKEGSTEDQSEKKDVTETNITPIKETNSNAVQKKSHIDVARNLISFHRYSHLDKHVKTQHGKVYPCQFCDIKFSCRISWTRHQKYHSATKDYLCDHCGRKFLQKFNLVDHIRVVHLKLKPYTCSICGKAFPTKRRAKNHMKLHSEVQVHEGEQNKVGQQTYKCDYCSKKFATKKRFKQHRQRHENQFECLYCHVILPSKDEFILHKNAHFRGHLVGHLTCHICGQILMTKYSLNRHMVIHSGDKKFACDICGTKFTQKSLVLRHILRNHNRNKQIETGKCVVCKRFYKDIDKHMESHEDYKRTCSCDVCGKRLNLKKHAKLHAATKDYLCDYCGKNFIQKSNLIDHIKVVHLKLKPYTCDICRRAFPTKRSAENHMRLHPRKEEVQNANKCEYCQKKFLCPKSFRTHRRTHHNQFECRYCPLIFTSKEALILHKQDHLSNHRGGLFTCQICGQMLMTKFTLNRHVESHSGIKKFACDICGTKFSQKALVLRHKLRKHNPGVQTGTPGKCVICKRGYKDIQKHMETHDEDKRKCVCDVCGKSYPTNSTLNRHKQSHYGIVYDCDICGKKYMKKGSLRSHKIKIHNVKEENREVVKQETQVVLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-