Basic Information

Insect: Nudaria mundana
Gene Symbol: -
Assembly: GCA_963556515.1
Location: OY748316.1:825016-836976[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.2e-05 0.0016 20.0 2.6 1 23 179 201 179 201 0.98

2 14 8.7e-05 0.011 17.4 2.8 1 23 207 230 207 230 0.93

3 14 0.0001 0.013 17.1 2.0 1 23 236 258 236 258 0.98

4 14 0.00029 0.037 15.7 2.1 1 23 263 285 263 285 0.99

5 14 9.2e-06 0.0012 20.4 4.1 1 23 291 313 291 313 0.99

6 14 3.4e-07 4.4e-05 25.0 1.0 1 23 319 342 319 342 0.96

7 14 1.5e-05 0.0019 19.8 3.3 1 23 348 370 348 370 0.97

8 14 2.8e-05 0.0036 18.9 1.4 1 23 376 398 376 398 0.98

9 14 6.4e-05 0.0083 17.8 1.9 1 23 404 426 404 426 0.99

10 14 6e-07 7.8e-05 24.2 1.5 1 23 432 454 432 454 0.98

11 14 2e-06 0.00025 22.6 3.6 1 23 460 482 460 482 0.98

12 14 0.14 18 7.3 2.9 1 23 488 507 488 507 0.94

13 14 3.9e-06 0.0005 21.6 1.1 1 23 513 535 513 535 0.98

14 14 0.00068 0.088 14.6 6.0 1 23 541 563 541 563 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.2e-05	0.0016	20.0	2.6	1	23	179	201	179	201	0.98
2	14	8.7e-05	0.011	17.4	2.8	1	23	207	230	207	230	0.93
3	14	0.0001	0.013	17.1	2.0	1	23	236	258	236	258	0.98
4	14	0.00029	0.037	15.7	2.1	1	23	263	285	263	285	0.99
5	14	9.2e-06	0.0012	20.4	4.1	1	23	291	313	291	313	0.99
6	14	3.4e-07	4.4e-05	25.0	1.0	1	23	319	342	319	342	0.96
7	14	1.5e-05	0.0019	19.8	3.3	1	23	348	370	348	370	0.97
8	14	2.8e-05	0.0036	18.9	1.4	1	23	376	398	376	398	0.98
9	14	6.4e-05	0.0083	17.8	1.9	1	23	404	426	404	426	0.99
10	14	6e-07	7.8e-05	24.2	1.5	1	23	432	454	432	454	0.98
11	14	2e-06	0.00025	22.6	3.6	1	23	460	482	460	482	0.98
12	14	0.14	18	7.3	2.9	1	23	488	507	488	507	0.94
13	14	3.9e-06	0.0005	21.6	1.1	1	23	513	535	513	535	0.98
14	14	0.00068	0.088	14.6	6.0	1	23	541	563	541	563	0.98

Sequence Information

Coding Sequence: ATGTCGTTTATGTGGAATATAAACACATTGTGTCGTTGCTGTCACACCCGAGGTCCTTTTAAGACCCTAAATGACTCGAATAAAACTGTTGAAGACTATGTTTTGTTACTTAAAGATACATTTAATGTTATCATAACTCCTGTTAACCAAGATAGTGATGGGACGTATACTATATGCGGTATATGTGAGCCACGTCTTAAAGATGCCGTTCTATTCAAAAAACAAGTTTTATATTGTGAAGAACGGTTAAAAGAATATCAAGTTTATAATTGTGTTAAagGTGTTAAAACAGAACCTCCTgaacataatataaatttagaattaGCCTGTATTAACGATAACAAACCACAAAGTTTGGATAAGTTTTTTGACTTAGAAGACGACGACCAGCCTTTGTCTATGTTACGTAGCGCTAATCTTCATACAGAGAAACCTGAAGTTACTTCTGAGGGTTTGTATGATGAAGACTGGGTGGATTCACAggatttaattgatgATGAAACACGAAAACATCAAGAAACGAATACCAAAAAATTTTCTTGCGAGATATGTCAAAAGAAATTTTCATACCACGGTTCTTTGGAAATGCATATGAAGTTGCATAACGGTGAAAAATCATTTTTATGTCACCTTTGTAATACTACATATAAGAATAACAAGGAACTAACTAGACATATAACAATTATGCATATTGTAAATGATCAGTACCCGTGTAACGTATGCGAAAAAGCTTTTGAAAAAGTTTGTTCATTAAAAAAGCACTTAAAATCTCACTATAACGAAAAATTTAAATGTACAGAGTGTCAGAAAGAGTTCCAATGGAAAAAAGGTTTAAAAGAACATATGAAAACACATACGGGTGAACGAAAATATACTTGCAGTGTCTGTAACAAGTCTTTTGGCCATAATCAAACGTTAAAATCTCACATGTATACACATACTGGCGAAAAGCCTTATGTCTGTGACATTTGCGGTAGAAGATTTCCTCAAAGAACACATTTAAAAAGacatatttatatcatacatacTGGACTCAAACCTCACACATGTAATATCTGTAAAAAACAATTTACCAGTAAAAGTTATTTAGCAATACACGAAAGACAACATACCGGTGAAAAGCCATATTCTTGCGAACTTTGCAAGAAACAATTTACAGCTTATACAACTTTGAAAGTACACATGCGTATTCATACTGGTTTTAAACCGTATTCCTGCAGTTTCTGTGATAGACAATTCGCACAAATGGCAAGTTTTAAACTCCACCAAAGAACTCATACAGGTGAAAAACCATTTTCTTGCAAAGTTTGCAAgaaatatttttctgacaatggTTATTTGAAAATTCATATGCGTGTACATTCCGGGGAGAAGCCGTTTTCTTGCGATATTTGCAAGAGATGTTTTAGAGAAACTGGACAGTTAAAAAGGCATATGCGCGTTCATACTGGTGTCAAGCCTTATACTTGtaaaatttgtaacaaacagaTAGGTAACTTATCTAAACATATGAAAGTACATTCGGATCAAAGACCTTTTAGTTGCAACGTGTGCTATAAACAGTTTTCCCTAAGTGGTAACCTAAAGTTACATATGAGAATCCACTCTGGCGAACGGCCTTTTAGCTGTGACTTATGTCAATGTCAATTTAGTCAAAGCAGTGGTTTGAAACGTCATCGGTGTATTCATATTGGAAAAAGTGACGTTTGA
Protein Sequence: MSFMWNINTLCRCCHTRGPFKTLNDSNKTVEDYVLLLKDTFNVIITPVNQDSDGTYTICGICEPRLKDAVLFKKQVLYCEERLKEYQVYNCVKGVKTEPPEHNINLELACINDNKPQSLDKFFDLEDDDQPLSMLRSANLHTEKPEVTSEGLYDEDWVDSQDLIDDETRKHQETNTKKFSCEICQKKFSYHGSLEMHMKLHNGEKSFLCHLCNTTYKNNKELTRHITIMHIVNDQYPCNVCEKAFEKVCSLKKHLKSHYNEKFKCTECQKEFQWKKGLKEHMKTHTGERKYTCSVCNKSFGHNQTLKSHMYTHTGEKPYVCDICGRRFPQRTHLKRHIYIIHTGLKPHTCNICKKQFTSKSYLAIHERQHTGEKPYSCELCKKQFTAYTTLKVHMRIHTGFKPYSCSFCDRQFAQMASFKLHQRTHTGEKPFSCKVCKKYFSDNGYLKIHMRVHSGEKPFSCDICKRCFRETGQLKRHMRVHTGVKPYTCKICNKQIGNLSKHMKVHSDQRPFSCNVCYKQFSLSGNLKLHMRIHSGERPFSCDLCQCQFSQSSGLKRHRCIHIGKSDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -